Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LXE94_RS18485 Genome accession   NZ_CP090125
Coordinates   3465713..3466435 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain Bs96     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3460713..3471435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS18450 (LXE94_18405) fliW 3460852..3461283 (-) 432 WP_257986241.1 flagellar assembly protein FliW -
  LXE94_RS18455 (LXE94_18410) yviE 3461304..3461879 (-) 576 WP_257986242.1 DUF6470 family protein -
  LXE94_RS18460 (LXE94_18415) flgL 3461926..3462822 (-) 897 WP_040081667.1 flagellar hook-associated protein FlgL -
  LXE94_RS18465 (LXE94_18420) flgK 3462833..3464356 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  LXE94_RS18470 (LXE94_18425) flgN 3464375..3464857 (-) 483 WP_041351273.1 flagellar protein FlgN -
  LXE94_RS18475 (LXE94_18430) flgM 3464873..3465139 (-) 267 WP_144453729.1 flagellar biosynthesis anti-sigma factor FlgM -
  LXE94_RS18480 (LXE94_18435) yvyF 3465220..3465639 (-) 420 WP_144453731.1 TIGR03826 family flagellar region protein -
  LXE94_RS18485 (LXE94_18440) comFC 3465713..3466435 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  LXE94_RS18490 (LXE94_18445) comFB 3466399..3466695 (-) 297 WP_144453733.1 late competence protein ComFB -
  LXE94_RS18495 (LXE94_18450) comFA 3466755..3468146 (-) 1392 WP_070547860.1 ATP-dependent helicase ComFA Machinery gene
  LXE94_RS18500 (LXE94_18455) fakBA 3468252..3469097 (-) 846 WP_257986243.1 DegV family protein -
  LXE94_RS18505 (LXE94_18460) degU 3469195..3469884 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LXE94_RS18510 (LXE94_18465) degS 3469967..3471124 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=640726 LXE94_RS18485 WP_014481051.1 3465713..3466435(-) (comFC) [Bacillus subtilis strain Bs96]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=640726 LXE94_RS18485 WP_014481051.1 3465713..3466435(-) (comFC) [Bacillus subtilis strain Bs96]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992