Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LXE94_RS18495 Genome accession   NZ_CP090125
Coordinates   3466755..3468146 (-) Length   463 a.a.
NCBI ID   WP_070547860.1    Uniprot ID   -
Organism   Bacillus subtilis strain Bs96     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3461755..3473146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS18460 (LXE94_18415) flgL 3461926..3462822 (-) 897 WP_040081667.1 flagellar hook-associated protein FlgL -
  LXE94_RS18465 (LXE94_18420) flgK 3462833..3464356 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  LXE94_RS18470 (LXE94_18425) flgN 3464375..3464857 (-) 483 WP_041351273.1 flagellar protein FlgN -
  LXE94_RS18475 (LXE94_18430) flgM 3464873..3465139 (-) 267 WP_144453729.1 flagellar biosynthesis anti-sigma factor FlgM -
  LXE94_RS18480 (LXE94_18435) yvyF 3465220..3465639 (-) 420 WP_144453731.1 TIGR03826 family flagellar region protein -
  LXE94_RS18485 (LXE94_18440) comFC 3465713..3466435 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  LXE94_RS18490 (LXE94_18445) comFB 3466399..3466695 (-) 297 WP_144453733.1 late competence protein ComFB -
  LXE94_RS18495 (LXE94_18450) comFA 3466755..3468146 (-) 1392 WP_070547860.1 ATP-dependent helicase ComFA Machinery gene
  LXE94_RS18500 (LXE94_18455) fakBA 3468252..3469097 (-) 846 WP_257986243.1 DegV family protein -
  LXE94_RS18505 (LXE94_18460) degU 3469195..3469884 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LXE94_RS18510 (LXE94_18465) degS 3469967..3471124 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  LXE94_RS18515 (LXE94_18470) yvyE 3471341..3471994 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52557.52 Da        Isoelectric Point: 9.7976

>NTDB_id=640727 LXE94_RS18495 WP_070547860.1 3466755..3468146(-) (comFA) [Bacillus subtilis strain Bs96]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGAEISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=640727 LXE94_RS18495 WP_070547860.1 3466755..3468146(-) (comFA) [Bacillus subtilis strain Bs96]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGAAATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

97.84

100

0.978