Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   X809_RS26435 Genome accession   NC_023037
Coordinates   6004545..6005036 (-) Length   163 a.a.
NCBI ID   WP_013312801.1    Uniprot ID   A0A0M1Q500
Organism   Paenibacillus polymyxa CR1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5999545..6010036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  X809_RS26415 (X809_42050) opp4C 6000020..6000943 (-) 924 WP_013312797.1 oligopeptide ABC transporter permease -
  X809_RS26420 (X809_42055) - 6000955..6001917 (-) 963 WP_023991143.1 ABC transporter permease -
  X809_RS26425 (X809_42060) - 6001986..6003725 (-) 1740 WP_023991144.1 ABC transporter substrate-binding protein -
  X809_RS26430 (X809_42065) rpsR 6004251..6004523 (-) 273 WP_013312800.1 30S ribosomal protein S18 -
  X809_RS26435 (X809_42070) ssbA 6004545..6005036 (-) 492 WP_013312801.1 single-stranded DNA-binding protein Machinery gene
  X809_RS26440 (X809_42075) rpsF 6005086..6005370 (-) 285 WP_013312802.1 30S ribosomal protein S6 -
  X809_RS26445 (X809_42080) - 6005689..6005883 (+) 195 WP_013312803.1 YjzC family protein -
  X809_RS26450 (X809_42085) - 6006251..6006568 (+) 318 WP_013312804.1 hypothetical protein -
  X809_RS26455 (X809_42090) - 6006650..6007015 (-) 366 WP_023991145.1 hypothetical protein -
  X809_RS26460 (X809_42095) - 6007282..6007542 (+) 261 WP_023991146.1 hypothetical protein -
  X809_RS26470 (X809_42105) - 6007914..6008120 (-) 207 WP_023991148.1 DUF951 domain-containing protein -
  X809_RS26475 (X809_42110) - 6008110..6009060 (-) 951 WP_023991149.1 mechanosensitive ion channel family protein -
  X809_RS26480 (X809_42115) yyaC 6009312..6009917 (+) 606 WP_023991150.1 spore protease YyaC -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17852.55 Da        Isoelectric Point: 4.8369

>NTDB_id=64065 X809_RS26435 WP_013312801.1 6004545..6005036(-) (ssbA) [Paenibacillus polymyxa CR1]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTSQGGEREADFLPIVTWRQLAETCANYLRKGRLTAVEGRVQVR
NYENNEGKRVYVTEIVADNVRFLESNRDGGNGGGNSGGAAREESPFGGGNSNSGRGNNNSRNNQDPFSDDGKPIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=64065 X809_RS26435 WP_013312801.1 6004545..6005036(-) (ssbA) [Paenibacillus polymyxa CR1]
TTGTTGAACCGTGTCATTCTGATCGGTCGTTTGACCAAAGATCCAGAGCTGCGCTATACACCATCTGGTGTAGCAGTAAC
CCAGTTCACCCTGGCTGTAGACCGTCCGTTTACGAGTCAAGGCGGCGAACGGGAAGCGGATTTCTTGCCGATCGTAACCT
GGCGTCAGCTTGCTGAAACATGCGCTAACTATCTTCGCAAAGGTCGTTTAACGGCTGTTGAAGGCCGTGTTCAGGTGCGT
AATTATGAGAACAATGAAGGAAAACGTGTATACGTGACTGAAATTGTAGCTGATAATGTGCGTTTCTTGGAATCTAACCG
CGATGGCGGTAACGGTGGCGGCAATAGCGGTGGAGCTGCGCGTGAGGAGTCTCCTTTCGGAGGCGGTAACAGCAATAGTG
GACGCGGGAATAATAACTCGCGAAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATCGATATTTCGGATGATGAT
TTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1Q500

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.382

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.528
  ssb Neisseria meningitidis MC58

35.165

100

0.393
  ssb Neisseria gonorrhoeae MS11

34.078

100

0.374

Multiple sequence alignment