Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LZK81_RS11925 Genome accession   NZ_CP090095
Coordinates   2376371..2376919 (-) Length   182 a.a.
NCBI ID   WP_007763736.1    Uniprot ID   A0A068SQ45
Organism   Neorhizobium galegae strain 7g     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2371371..2381919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZK81_RS11910 (LZK81_11910) gyrA 2371395..2374211 (-) 2817 WP_233953419.1 DNA gyrase subunit A -
  LZK81_RS11915 (LZK81_11915) - 2374439..2375068 (+) 630 WP_038586850.1 MarC family protein -
  LZK81_RS11920 (LZK81_11920) - 2375173..2376321 (+) 1149 WP_233956533.1 HPP family protein -
  LZK81_RS11925 (LZK81_11925) ssb 2376371..2376919 (-) 549 WP_007763736.1 single-stranded DNA-binding protein Machinery gene
  LZK81_RS11930 (LZK81_11930) uvrA 2377167..2380088 (+) 2922 WP_046627612.1 excinuclease ABC subunit UvrA -
  LZK81_RS11935 (LZK81_11935) - 2380113..2380925 (+) 813 WP_233953420.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19566.36 Da        Isoelectric Point: 5.3667

>NTDB_id=640644 LZK81_RS11925 WP_007763736.1 2376371..2376919(-) (ssb) [Neorhizobium galegae strain 7g]
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNNGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGALQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGDRGGAGGNRVGNDFGGNDFGGGDDYERRPAAGGASRGG
QSSGGQPAGGNFSRDLDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=640644 LZK81_RS11925 WP_007763736.1 2376371..2376919(-) (ssb) [Neorhizobium galegae strain 7g]
ATGGCTGGTAGTGTGAACAAGGTAATCCTGGTGGGGAATGTGGGGGCTGATCCTGAAATCCGCCGGACGCAGGACGGCCG
GCCGATCGCCAATCTTCGCATTGCCACGTCCGAAACCTGGCGTGATCGCAACAATGGCGAACGCCGCGAGAAGACCGAAT
GGCATACGGTCGTCGTCTTCAACGAAGGTCTCTGCAAGGTCGTTGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCGCGCTGCAGACCCGCAAGTGGCAGGACCAGACCGGCAACGACCGCTATTCAACGGAAATCGTGCTTCAGGGCTT
CAACTCGACGCTGACCATGCTGGATGGCCGCGGCGAGGGCGGCGGCGACCGTGGTGGTGCTGGCGGCAATCGTGTCGGCA
ATGATTTCGGCGGCAACGACTTCGGCGGCGGTGACGATTACGAGCGCCGGCCTGCGGCGGGCGGTGCGAGCCGTGGCGGT
CAGTCCTCCGGCGGTCAGCCGGCTGGCGGCAATTTCTCGCGCGATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A068SQ45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.316

100

0.484
  ssb Vibrio cholerae strain A1552

47.191

97.802

0.462
  ssb Neisseria meningitidis MC58

36.559

100

0.374
  ssb Neisseria gonorrhoeae MS11

36.559

100

0.374