Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LW858_RS26900 Genome accession   NZ_CP090081
Coordinates   5206022..5206534 (+) Length   170 a.a.
NCBI ID   WP_000981966.1    Uniprot ID   A0A0A3WKS9
Organism   Bacillus cereus strain CPT56D-587-MTF     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5201022..5211534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LW858_RS26875 (LW858_26875) - 5201609..5202490 (+) 882 WP_000364814.1 mechanosensitive ion channel family protein -
  LW858_RS26880 (LW858_26880) - 5202511..5202708 (+) 198 WP_000435485.1 DUF951 domain-containing protein -
  LW858_RS26885 (LW858_26885) - 5202842..5204211 (+) 1370 Protein_5265 IS1182-like element ISBth7 family transposase -
  LW858_RS26890 (LW858_26890) ychF 5204413..5205513 (+) 1101 WP_000524657.1 redox-regulated ATPase YchF -
  LW858_RS26895 (LW858_26895) rpsF 5205705..5205995 (+) 291 WP_001233778.1 30S ribosomal protein S6 -
  LW858_RS26900 (LW858_26900) ssbA 5206022..5206534 (+) 513 WP_000981966.1 single-stranded DNA-binding protein Machinery gene
  LW858_RS26905 (LW858_26905) rpsR 5206580..5206813 (+) 234 WP_000918873.1 30S ribosomal protein S18 -
  LW858_RS26910 (LW858_26910) - 5206893..5207828 (+) 936 WP_000814840.1 YybS family protein -
  LW858_RS26915 (LW858_26915) - 5207907..5209880 (+) 1974 WP_233935678.1 DHH family phosphoesterase -
  LW858_RS26920 (LW858_26920) rplI 5209877..5210323 (+) 447 WP_000864228.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18494.29 Da        Isoelectric Point: 4.9327

>NTDB_id=640628 LW858_RS26900 WP_000981966.1 5206022..5206534(+) (ssbA) [Bacillus cereus strain CPT56D-587-MTF]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=640628 LW858_RS26900 WP_000981966.1 5206022..5206534(+) (ssbA) [Bacillus cereus strain CPT56D-587-MTF]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTCGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAGCAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGGCGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTGCAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3WKS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

37.43

100

0.394