Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LXF01_RS15515 | Genome accession | NZ_CP090067 |
| Coordinates | 3174932..3175519 (-) | Length | 195 a.a. |
| NCBI ID | WP_087554243.1 | Uniprot ID | - |
| Organism | Acinetobacter sp. SH20PTE14 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 3150752..3181313 | 3174932..3175519 | within | 0 |
| IScluster/Tn | 3150752..3174473 | 3174932..3175519 | flank | 459 |
Gene organization within MGE regions
Location: 3150752..3181313
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LXF01_RS15375 (LXF01_15375) | - | 3150752..3151456 (+) | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| LXF01_RS15380 (LXF01_15380) | - | 3151990..3152865 (-) | 876 | WP_012478242.1 | SDR family oxidoreductase | - |
| LXF01_RS15385 (LXF01_15385) | - | 3153001..3153477 (-) | 477 | WP_025465772.1 | hypothetical protein | - |
| LXF01_RS15390 (LXF01_15390) | - | 3153483..3153716 (-) | 234 | WP_000773187.1 | hypothetical protein | - |
| LXF01_RS15395 (LXF01_15395) | - | 3153904..3154608 (+) | 705 | WP_005028420.1 | IS6 family transposase | - |
| LXF01_RS15400 (LXF01_15400) | - | 3154644..3154910 (-) | 267 | Protein_2975 | LysR family transcriptional regulator | - |
| LXF01_RS15405 (LXF01_15405) | floR | 3154938..3156152 (-) | 1215 | WP_000214122.1 | chloramphenicol/florfenicol efflux MFS transporter FloR | - |
| LXF01_RS15410 (LXF01_15410) | - | 3156304..3157276 (-) | 973 | Protein_2977 | IS3 family transposase | - |
| LXF01_RS15415 (LXF01_15415) | - | 3157459..3157698 (-) | 240 | WP_267967468.1 | recombinase family protein | - |
| LXF01_RS15420 (LXF01_15420) | - | 3157738..3158442 (-) | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| LXF01_RS15425 (LXF01_15425) | - | 3158572..3159387 (+) | 816 | WP_000018323.1 | APH(3')-I family aminoglycoside O-phosphotransferase | - |
| LXF01_RS15430 (LXF01_15430) | - | 3159524..3159925 (-) | 402 | WP_001183556.1 | LysR substrate-binding domain-containing protein | - |
| LXF01_RS15435 (LXF01_15435) | - | 3159965..3160669 (-) | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| LXF01_RS15440 (LXF01_15440) | - | 3160731..3161084 (-) | 354 | Protein_2983 | transposase zinc-binding domain-containing protein | - |
| LXF01_RS15445 (LXF01_15445) | - | 3161196..3161663 (-) | 468 | Protein_2984 | GMP synthase (glutamine-hydrolyzing) | - |
| LXF01_RS15450 (LXF01_15450) | estT | 3161729..3162589 (-) | 861 | WP_077782102.1 | macrolide hydrolase EstT | - |
| LXF01_RS15455 (LXF01_15455) | tet(X) | 3162607..3163770 (-) | 1164 | WP_064754130.1 | tetracycline-inactivating monooxygenase Tet(X) | - |
| LXF01_RS15460 (LXF01_15460) | - | 3163767..3164144 (-) | 378 | WP_044502095.1 | hypothetical protein | - |
| LXF01_RS15465 (LXF01_15465) | - | 3164715..3166106 (-) | 1392 | Protein_2988 | IS91-like element ISVsa3 family transposase | - |
| LXF01_RS15470 (LXF01_15470) | - | 3166159..3166863 (-) | 705 | WP_001067794.1 | IS6-like element IS1007 family transposase | - |
| LXF01_RS15475 (LXF01_15475) | - | 3166962..3167630 (+) | 669 | Protein_2990 | copper resistance protein B | - |
| LXF01_RS15480 (LXF01_15480) | - | 3167654..3167875 (+) | 222 | WP_058870629.1 | hypothetical protein | - |
| LXF01_RS15485 (LXF01_15485) | - | 3167942..3169017 (+) | 1076 | Protein_2992 | IS3 family transposase | - |
| LXF01_RS15490 (LXF01_15490) | - | 3169523..3169993 (+) | 471 | WP_058951564.1 | TIR domain-containing protein | - |
| LXF01_RS15495 (LXF01_15495) | - | 3170002..3170868 (+) | 867 | WP_058952493.1 | DUF4231 domain-containing protein | - |
| LXF01_RS15500 (LXF01_15500) | - | 3170876..3173446 (-) | 2571 | WP_233944676.1 | toll/interleukin-1 receptor domain-containing protein | - |
| LXF01_RS15505 (LXF01_15505) | - | 3173604..3174536 (-) | 933 | WP_180024592.1 | IS5 family transposase | - |
| LXF01_RS15510 (LXF01_15510) | - | 3174607..3174780 (-) | 174 | Protein_2997 | site-specific integrase | - |
| LXF01_RS15515 (LXF01_15515) | ssb | 3174932..3175519 (-) | 588 | WP_087554243.1 | single-stranded DNA-binding protein | Machinery gene |
| LXF01_RS15520 (LXF01_15520) | - | 3175591..3176196 (-) | 606 | WP_228130655.1 | hypothetical protein | - |
| LXF01_RS15525 (LXF01_15525) | - | 3176324..3178111 (-) | 1788 | WP_151838364.1 | site-specific integrase | - |
| LXF01_RS15530 (LXF01_15530) | - | 3178124..3180190 (-) | 2067 | WP_180024593.1 | motility associated factor glycosyltransferase family protein | - |
| LXF01_RS15535 (LXF01_15535) | - | 3180183..3181313 (-) | 1131 | WP_151838363.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 195 a.a. Molecular weight: 21416.21 Da Isoelectric Point: 6.4830
>NTDB_id=640559 LXF01_RS15515 WP_087554243.1 3174932..3175519(-) (ssb) [Acinetobacter sp. SH20PTE14]
MARGSVNKVILIGSLGKDPETKSFPNGGSLTQFSIATSDSWVDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYI
EGSLRTRQWTDQNGQERYTTEIRGEQMQMLDSARQQGEQGQGGGEFNQPRFNNNQGGYNNNQNQGGYGNQGGYGNNQPAQ
GNSYGNNNPGGFAPKQQPAPTPAPAPADLDDDLPF
MARGSVNKVILIGSLGKDPETKSFPNGGSLTQFSIATSDSWVDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYI
EGSLRTRQWTDQNGQERYTTEIRGEQMQMLDSARQQGEQGQGGGEFNQPRFNNNQGGYNNNQNQGGYGNQGGYGNNQPAQ
GNSYGNNNPGGFAPKQQPAPTPAPAPADLDDDLPF
Nucleotide
Download Length: 588 bp
>NTDB_id=640559 LXF01_RS15515 WP_087554243.1 3174932..3175519(-) (ssb) [Acinetobacter sp. SH20PTE14]
ATGGCTAGAGGTTCGGTTAACAAGGTCATTCTGATTGGCAGTTTAGGAAAAGACCCTGAGACCAAAAGTTTCCCAAATGG
TGGTTCACTTACACAGTTTTCAATAGCTACTAGTGATTCTTGGGTAGATAAAAATACTGGTGAGCGTAAAGAGCAAACGG
AATGGCATCGTATTGTGTTGCACAACCGTTTAGGCGAAATCGCTCAGCAATTTTTACGTAAAGGTTCTAAAGTTTACATT
GAGGGATCATTGCGTACCCGTCAATGGACGGATCAAAATGGTCAAGAGCGTTACACTACAGAAATTCGTGGCGAACAAAT
GCAAATGCTAGATTCAGCTCGTCAACAAGGTGAGCAAGGTCAAGGTGGTGGTGAATTTAATCAACCACGTTTTAACAACA
ATCAAGGTGGTTATAATAATAACCAAAACCAAGGCGGCTACGGCAACCAAGGTGGTTATGGTAATAATCAACCGGCTCAA
GGCAATAGCTACGGCAACAATAACCCGGGTGGTTTTGCGCCGAAACAACAGCCTGCACCGACACCAGCACCAGCACCAGC
AGACTTAGATGACGATCTACCGTTCTGA
ATGGCTAGAGGTTCGGTTAACAAGGTCATTCTGATTGGCAGTTTAGGAAAAGACCCTGAGACCAAAAGTTTCCCAAATGG
TGGTTCACTTACACAGTTTTCAATAGCTACTAGTGATTCTTGGGTAGATAAAAATACTGGTGAGCGTAAAGAGCAAACGG
AATGGCATCGTATTGTGTTGCACAACCGTTTAGGCGAAATCGCTCAGCAATTTTTACGTAAAGGTTCTAAAGTTTACATT
GAGGGATCATTGCGTACCCGTCAATGGACGGATCAAAATGGTCAAGAGCGTTACACTACAGAAATTCGTGGCGAACAAAT
GCAAATGCTAGATTCAGCTCGTCAACAAGGTGAGCAAGGTCAAGGTGGTGGTGAATTTAATCAACCACGTTTTAACAACA
ATCAAGGTGGTTATAATAATAACCAAAACCAAGGCGGCTACGGCAACCAAGGTGGTTATGGTAATAATCAACCGGCTCAA
GGCAATAGCTACGGCAACAATAACCCGGGTGGTTTTGCGCCGAAACAACAGCCTGCACCGACACCAGCACCAGCACCAGC
AGACTTAGATGACGATCTACCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
50.785 |
97.949 |
0.497 |
| ssb | Vibrio cholerae strain A1552 |
45.5 |
100 |
0.467 |
| ssb | Neisseria meningitidis MC58 |
39.216 |
100 |
0.41 |
| ssb | Neisseria gonorrhoeae MS11 |
39.216 |
100 |
0.41 |