Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LXF01_RS15300 Genome accession   NZ_CP090067
Coordinates   3135752..3136330 (-) Length   192 a.a.
NCBI ID   WP_180025068.1    Uniprot ID   -
Organism   Acinetobacter sp. SH20PTE14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3130752..3141330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXF01_RS15280 (LXF01_15280) - 3131973..3132851 (-) 879 WP_078190517.1 pirin family protein -
  LXF01_RS15285 (LXF01_15285) ycaC 3133180..3133806 (+) 627 WP_078193174.1 isochorismate family cysteine hydrolase YcaC -
  LXF01_RS15290 (LXF01_15290) - 3133914..3134837 (+) 924 WP_180088779.1 LysR substrate-binding domain-containing protein -
  LXF01_RS15295 (LXF01_15295) ahpC 3134905..3135468 (-) 564 WP_078190520.1 alkyl hydroperoxide reductase subunit C -
  LXF01_RS15300 (LXF01_15300) ssb 3135752..3136330 (-) 579 WP_180025068.1 single-stranded DNA-binding protein Machinery gene
  LXF01_RS15305 (LXF01_15305) - 3136608..3137090 (-) 483 WP_058870464.1 hypothetical protein -
  LXF01_RS15310 (LXF01_15310) - 3137165..3137383 (+) 219 WP_005180668.1 helix-turn-helix transcriptional regulator -
  LXF01_RS15315 (LXF01_15315) - 3137429..3138124 (-) 696 WP_151838238.1 SprT family zinc-dependent metalloprotease -
  LXF01_RS15320 (LXF01_15320) - 3138156..3138860 (-) 705 WP_151838237.1 IS6-like element IS1006 family transposase -
  LXF01_RS15325 (LXF01_15325) - 3139018..3139917 (-) 900 WP_004665978.1 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21125.71 Da        Isoelectric Point: 5.2494

>NTDB_id=640558 LXF01_RS15300 WP_180025068.1 3135752..3136330(-) (ssb) [Acinetobacter sp. SH20PTE14]
MSNVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEGSLR
TRQWTDQGGQERYTTEIRGEQMQMLDNNRQQGEQGQGGDFGQPRFNNQQGGYNNNQNQGGYGNSSNQGGYGNNQPAQGNS
YGNNNPGGFAPKQQPAPTPAPAAADLDDDLPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=640558 LXF01_RS15300 WP_180025068.1 3135752..3136330(-) (ssb) [Acinetobacter sp. SH20PTE14]
ATGAGCAATGTCATTTTAGTTGGTACTTTGGGTCGTGACCCTGAAACAAAAACTTTCCCAAATGGTGGTTCTCTCACTCA
GTTCTCAATTGCAACGAGTGATTCATGGACAGATAAAAATACAGGTGAACGTAAAGAGCAAACAGAATGGCACCGTATTG
TGTTACATAACCGCTTAGGTGAAATTGCACAGCAATATTTGCGCAAAGGTTCTAAAGTTTATATTGAAGGTTCATTACGT
ACTCGTCAGTGGACAGATCAAGGCGGTCAAGAGCGTTACACGACTGAAATTCGTGGTGAACAAATGCAAATGCTTGACAA
TAATCGCCAACAAGGCGAACAAGGTCAAGGCGGTGATTTTGGTCAGCCTCGTTTTAATAATCAACAAGGTGGTTATAACA
ATAACCAAAACCAAGGTGGCTACGGTAATAGCTCAAACCAAGGCGGTTATGGCAATAACCAACCGGCTCAAGGCAATAGC
TATGGCAATAACAACCCAGGTGGTTTTGCGCCAAAACAACAGCCTGCACCGACACCGGCTCCTGCAGCAGCAGATTTAGA
TGACGACTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.521

100

0.505
  ssb Vibrio cholerae strain A1552

43.878

100

0.448
  ssb Neisseria gonorrhoeae MS11

39.378

100

0.396
  ssb Neisseria meningitidis MC58

39.378

100

0.396