Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LW139_RS18735 Genome accession   NZ_CP090064
Coordinates   3953007..3953534 (+) Length   175 a.a.
NCBI ID   WP_088494417.1    Uniprot ID   -
Organism   Proteus vulgaris strain Ld01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3948007..3958534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LW139_RS18730 (LW139_18730) uvrA 3949920..3952754 (-) 2835 WP_109408444.1 excinuclease ABC subunit UvrA -
  LW139_RS18735 (LW139_18735) ssb 3953007..3953534 (+) 528 WP_088494417.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LW139_RS18740 (LW139_18740) zur 3953877..3954407 (+) 531 WP_166539889.1 zinc uptake transcriptional repressor Zur -
  LW139_RS18745 (LW139_18745) - 3954454..3954659 (-) 206 Protein_3651 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family -
  LW139_RS18750 (LW139_18750) - 3954745..3954999 (-) 255 WP_247850376.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  LW139_RS18755 (LW139_18755) lexA 3955160..3955771 (-) 612 WP_072070935.1 transcriptional repressor LexA -
  LW139_RS18760 (LW139_18760) - 3955899..3956270 (-) 372 WP_006536373.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18874.92 Da        Isoelectric Point: 4.9468

>NTDB_id=640485 LW139_RS18735 WP_088494417.1 3953007..3953534(+) (ssb) [Proteus vulgaris strain Ld01]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGSMQMLGGRGGQDGAPSQGGQGGWGQPQQPQASQQFSGGAQSRPAQQPAAAPA
PNNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=640485 LW139_RS18735 WP_088494417.1 3953007..3953534(+) (ssb) [Proteus vulgaris strain Ld01]
ATGGCGAGCAGAGGCGTAAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
CGGTGCAGTTGCCAACCTAACACTGGCAACATCAGAAAGCTGGCGCGATAAACAAACCGGTGAAATGAAAGAAAAAACCG
AGTGGCACCGTGTGGTAATTTTCGGCAAATTAGCTGAAATTGCAGGCGAATATCTGCGTAAAGGTTCACAAGTGTATATC
GAAGGTCAATTACAAACACGTAAATGGCAAGACCAAAGTGGTCAAGACAGATATAGCACTGAAGTTGTCGTTAACATCGG
TGGCTCAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATGGCGCACCTTCACAAGGTGGTCAAGGCGGTTGGGGCCAAC
CACAACAGCCACAAGCATCACAACAATTTAGCGGTGGTGCGCAATCTCGCCCAGCACAACAACCCGCAGCAGCACCTGCA
CCAAACAATGAACCACCAATGGATTTTGATGACGACATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.514

100

0.777
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.6
  ssb Neisseria meningitidis MC58

48.603

100

0.497
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.497