Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PALA20_RS03560 Genome accession   NZ_CP107064
Coordinates   764467..764964 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain PALA20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 759467..769964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA20_RS03540 (PALA20_00705) pchD 760251..761894 (+) 1644 WP_003093650.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  PALA20_RS03545 (PALA20_00706) pchC 761891..762646 (+) 756 WP_003093651.1 pyochelin biosynthesis editing thioesterase PchC -
  PALA20_RS03550 (PALA20_00707) pchB 762646..762951 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  PALA20_RS03555 (PALA20_00708) pchA 762948..764378 (+) 1431 WP_003093658.1 isochorismate synthase PchA -
  PALA20_RS03560 (PALA20_00709) ssb 764467..764964 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  PALA20_RS03565 (PALA20_00710) - 764981..766369 (-) 1389 WP_003103910.1 MFS transporter -
  PALA20_RS03570 (PALA20_00711) uvrA 766583..769420 (+) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  PALA20_RS03575 (PALA20_00712) bfr 769492..769956 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=640348 PALA20_RS03560 WP_003114685.1 764467..764964(-) (ssb) [Pseudomonas aeruginosa strain PALA20]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=640348 PALA20_RS03560 WP_003114685.1 764467..764964(-) (ssb) [Pseudomonas aeruginosa strain PALA20]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515