Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LV780_RS01945 Genome accession   NZ_CP090021
Coordinates   389969..390457 (-) Length   162 a.a.
NCBI ID   WP_101340629.1    Uniprot ID   A0A2T5KF76
Organism   Cereibacter azotoformans strain SY5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 384969..395457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV780_RS01900 (LV780_01900) nusB 385328..385801 (+) 474 WP_011907481.1 transcription antitermination factor NusB -
  LV780_RS01905 (LV780_01905) - 386046..386366 (+) 321 WP_011907482.1 hypothetical protein -
  LV780_RS01910 (LV780_01910) - 386348..386581 (-) 234 WP_147326416.1 hypothetical protein -
  LV780_RS01915 (LV780_01915) - 386568..387440 (+) 873 WP_108220121.1 YdiY family protein -
  LV780_RS01920 (LV780_01920) - 387810..388277 (+) 468 WP_044247750.1 MmcB family DNA repair protein -
  LV780_RS01925 (LV780_01925) - 388278..388499 (-) 222 WP_011907485.1 DUF6324 family protein -
  LV780_RS01930 (LV780_01930) - 388612..389097 (+) 486 WP_011907486.1 GNAT family N-acetyltransferase -
  LV780_RS01940 (LV780_01940) - 389517..389715 (-) 199 Protein_383 transposase -
  LV780_RS01945 (LV780_01945) ssb 389969..390457 (-) 489 WP_101340629.1 single-stranded DNA-binding protein Machinery gene
  LV780_RS01950 (LV780_01950) - 390670..391284 (+) 615 WP_108220141.1 lytic transglycosylase domain-containing protein -
  LV780_RS01955 (LV780_01955) serS 391341..392633 (-) 1293 WP_108220122.1 serine--tRNA ligase -
  LV780_RS01960 (LV780_01960) - 392721..393293 (-) 573 WP_108220123.1 superoxide dismutase family protein -
  LV780_RS01965 (LV780_01965) yajC 393541..393870 (+) 330 WP_011907512.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17863.54 Da        Isoelectric Point: 5.9821

>NTDB_id=640274 LV780_RS01945 WP_101340629.1 389969..390457(-) (ssb) [Cereibacter azotoformans strain SY5]
MAGSVNKVIIIGNLGRDPEVRSFQNGGKVVNLRIATSEQWRDRASGERKERTEWHSVAIFDENLARVAEQYLRKGSTVYI
EGQLETRKWQDQSGQDRYTTEVVLRPFRSALTMLGGRGDSAGSSGGYEDRGGSESYDNFGGSRGNAPSGGGRRSDLDDEI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=640274 LV780_RS01945 WP_101340629.1 389969..390457(-) (ssb) [Cereibacter azotoformans strain SY5]
ATGGCGGGCTCGGTCAACAAGGTCATCATCATCGGCAATCTCGGCCGCGATCCCGAGGTTCGGAGCTTTCAGAACGGCGG
GAAGGTCGTGAACCTGCGCATCGCCACATCCGAGCAGTGGCGCGACCGCGCCTCGGGCGAGCGGAAGGAGCGGACCGAGT
GGCATTCGGTTGCGATCTTCGACGAGAACCTCGCCCGGGTGGCCGAGCAATATCTGCGCAAGGGCTCGACGGTCTATATC
GAGGGCCAGCTCGAGACGCGGAAGTGGCAGGACCAGTCGGGCCAGGACCGCTACACGACCGAGGTCGTGCTGCGCCCGTT
CCGCAGCGCCCTGACGATGCTCGGAGGCCGCGGAGACAGCGCGGGCTCCAGCGGCGGCTACGAAGACCGCGGCGGCTCGG
AAAGCTACGACAACTTCGGAGGCTCCCGCGGCAACGCCCCCTCGGGTGGCGGTCGGCGGAGCGATCTGGATGACGAGATC
CCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T5KF76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.237

100

0.531
  ssb Vibrio cholerae strain A1552

49.711

100

0.531
  ssb Neisseria gonorrhoeae MS11

41.899

100

0.463
  ssb Neisseria meningitidis MC58

40.223

100

0.444