Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   LWM38_RS06005 Genome accession   NZ_CP090019
Coordinates   1289701..1290282 (+) Length   193 a.a.
NCBI ID   WP_017057552.1    Uniprot ID   A0A2N7JGJ3
Organism   Vibrio kanaloae strain KH-4     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1284701..1295282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWM38_RS05985 (LWM38_05985) panP 1285001..1286644 (-) 1644 WP_233895120.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  LWM38_RS05990 (LWM38_05990) - 1286763..1287290 (-) 528 WP_017057555.1 hypothetical protein -
  LWM38_RS05995 (LWM38_05995) - 1287465..1288370 (-) 906 WP_137007537.1 lysine exporter LysO family protein -
  LWM38_RS06000 (LWM38_06000) - 1288425..1289345 (-) 921 WP_029627151.1 HDOD domain-containing protein -
  LWM38_RS06005 (LWM38_06005) tfoX 1289701..1290282 (+) 582 WP_017057552.1 TfoX/Sxy family DNA transformation protein Regulator
  LWM38_RS06010 (LWM38_06010) - 1290413..1290955 (-) 543 WP_017057551.1 hypothetical protein -
  LWM38_RS06015 (LWM38_06015) - 1291185..1291682 (-) 498 WP_233895122.1 response regulator -
  LWM38_RS06020 (LWM38_06020) - 1291675..1293618 (-) 1944 WP_077680537.1 ATP-binding protein -
  LWM38_RS06025 (LWM38_06025) - 1293802..1295064 (+) 1263 WP_017057548.1 DUF945 family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22141.63 Da        Isoelectric Point: 9.7798

>NTDB_id=640254 LWM38_RS06005 WP_017057552.1 1289701..1290282(+) (tfoX) [Vibrio kanaloae strain KH-4]
MTETAFINYVNQFGKHQKRSMFGGLGLFQNDAMFALLTGGCLFIRGGNSLDKKLTDLDCEKYRHVKKQTIATVNYYDITD
LFTCEHPELDSIIRTSIDNSIQQRSFKKSSASRRLRDLPNMQLTLERMVKKAGVDDVSMFMQLGAPEVFNKVRKAYGNDV
DLKLLWKFAGAIDGIHWKLLQEPRKQQLLKSCH

Nucleotide


Download         Length: 582 bp        

>NTDB_id=640254 LWM38_RS06005 WP_017057552.1 1289701..1290282(+) (tfoX) [Vibrio kanaloae strain KH-4]
ATGACAGAGACAGCATTTATTAACTACGTGAATCAATTTGGCAAACATCAAAAACGTTCTATGTTTGGAGGTCTTGGCCT
TTTTCAAAACGACGCTATGTTCGCTTTATTGACAGGAGGTTGTTTATTCATTAGAGGTGGTAATTCATTAGATAAAAAAC
TGACGGACCTTGATTGTGAAAAATATCGCCATGTTAAAAAGCAGACAATAGCAACGGTAAATTATTACGATATTACTGAC
CTGTTTACATGTGAACATCCTGAATTGGATAGCATTATTCGTACTTCAATCGATAATTCAATACAGCAACGTAGTTTCAA
AAAATCTTCAGCGAGCCGCAGGTTAAGAGATCTGCCCAACATGCAACTTACACTAGAACGTATGGTGAAAAAGGCTGGTG
TGGATGATGTTTCAATGTTTATGCAGTTGGGTGCGCCTGAAGTGTTTAATAAGGTTCGCAAAGCGTACGGAAATGATGTT
GACTTAAAACTACTTTGGAAATTTGCAGGTGCAATTGATGGTATCCATTGGAAGCTGTTGCAAGAGCCACGCAAGCAGCA
ATTATTAAAGAGCTGCCATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7JGJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

72.021

100

0.72
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

72.021

100

0.72
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

72.021

100

0.72
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

72.021

100

0.72
  tfoX Vibrio cholerae strain A1552

72.021

100

0.72
  tfoX Vibrio campbellii strain DS40M4

68.912

100

0.689
  tfoX Vibrio parahaemolyticus RIMD 2210633

68.912

100

0.689
  tfoX Aliivibrio fischeri ES114

58.947

98.446

0.58