Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FH104_RS04320 Genome accession   NZ_CP090014
Coordinates   845039..845554 (-) Length   171 a.a.
NCBI ID   WP_002447969.1    Uniprot ID   A0A8I1BDZ2
Organism   Staphylococcus hominis strain acrlk     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 840039..850554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH104_RS04290 (FH104_04290) - 841161..841790 (+) 630 WP_017175678.1 NDxxF motif lipoprotein -
  FH104_RS04295 (FH104_04295) - 841887..842465 (-) 579 WP_017175677.1 histidine phosphatase family protein -
  FH104_RS04300 (FH104_04300) - 842743..842991 (-) 249 WP_002447983.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  FH104_RS04305 (FH104_04305) - 843312..843569 (+) 258 WP_017175676.1 helix-turn-helix domain-containing protein -
  FH104_RS04310 (FH104_04310) - 843628..844572 (-) 945 WP_048762530.1 hypothetical protein -
  FH104_RS04315 (FH104_04315) rpsR 844755..844997 (-) 243 WP_002447994.1 30S ribosomal protein S18 -
  FH104_RS04320 (FH104_04320) ssbA 845039..845554 (-) 516 WP_002447969.1 single-stranded DNA-binding protein Machinery gene
  FH104_RS04325 (FH104_04325) rpsF 845576..845872 (-) 297 WP_002447961.1 30S ribosomal protein S6 -
  FH104_RS04330 (FH104_04330) - 846121..846312 (+) 192 WP_048762495.1 hypothetical protein -
  FH104_RS04335 (FH104_04335) ychF 846381..847478 (-) 1098 WP_002447976.1 redox-regulated ATPase YchF -
  FH104_RS04340 (FH104_04340) - 847490..847693 (-) 204 WP_048762499.1 DUF951 domain-containing protein -
  FH104_RS04345 (FH104_04345) - 847714..848592 (-) 879 WP_049379440.1 mechanosensitive ion channel family protein -
  FH104_RS04350 (FH104_04350) - 848722..849546 (-) 825 WP_017175669.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18841.33 Da        Isoelectric Point: 4.9265

>NTDB_id=640205 FH104_RS04320 WP_002447969.1 845039..845554(-) (ssbA) [Staphylococcus hominis strain acrlk]
MINRVVLVGRLTKDPEYRSTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRHQGNNDFQDYGQGFGGSQSGQNTSYNNNNNRASNNNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=640205 FH104_RS04320 WP_002447969.1 845039..845554(-) (ssbA) [Staphylococcus hominis strain acrlk]
ATGATAAATCGAGTTGTATTAGTAGGTCGTTTAACTAAGGATCCAGAATACAGAAGTACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAACCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACGTTGTTGTAT
TTAGAAGACAAGCAGAAAACGTAAATAACTATCTTTCAAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATATTTGTCACTGAAGTTGTAGCGGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCACAAGGTGGACAACGTCATCAAGGAAATAATGATTTCCAAGATTATGGCCAAGGATTTGGTGGTTCACAATCAGGAC
AAAATACATCTTATAATAATAATAACAATCGTGCATCAAACAATAATCAATCAGATAACCCATTTGCAAATGCGAATGGT
CCAATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.111

100

0.643
  ssb Latilactobacillus sakei subsp. sakei 23K

54.913

100

0.556
  ssb Glaesserella parasuis strain SC1401

34.043

100

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.988

0.374