NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	ODQ18_RS01775	Genome accession	NZ_CP107039
Coordinates	340937..341542 (+)	Length	201 a.a.
NCBI ID	WP_003229717.1	Uniprot ID	O05392
Organism	Bacillus subtilis strain 11060
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 335937..346542

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ODQ18_RS01740 (ODQ18_01740)	-	336104..336244 (-)	141	WP_004398683.1	hypothetical protein	-
ODQ18_RS01745 (ODQ18_01745)	-	336251..336802 (-)	552	WP_306420272.1	DUF5412 family protein	-
ODQ18_RS01750 (ODQ18_01750)	-	336782..336904 (+)	123	WP_003229707.1	hypothetical protein	-
ODQ18_RS01755 (ODQ18_01755)	yrzF	336950..337597 (-)	648	WP_003246159.1	phosphotransferase	-
ODQ18_RS01760 (ODQ18_01760)	iolG	337835..338860 (+)	1026	WP_032726305.1	inositol 2-dehydrogenase	-
ODQ18_RS01765 (ODQ18_01765)	csbX	338931..340238 (+)	1308	WP_015483512.1	MFS transporter	-
ODQ18_RS01770 (ODQ18_01770)	bofC	340286..340798 (+)	513	WP_003229715.1	sporulation cell-cell signaling protein BofC	-
ODQ18_RS01775 (ODQ18_01775)	ruvA	340937..341542 (+)	606	WP_003229717.1	Holliday junction branch migration protein RuvA	Machinery gene
ODQ18_RS01780 (ODQ18_01780)	ruvB	341553..342557 (+)	1005	WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
ODQ18_RS01785 (ODQ18_01785)	yrzS	342550..342750 (+)	201	WP_003222669.1	DUF2905 domain-containing protein	-
ODQ18_RS01790 (ODQ18_01790)	queA	342780..343808 (+)	1029	WP_041850173.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
ODQ18_RS01795 (ODQ18_01795)	tgt	343835..344980 (+)	1146	WP_003229725.1	tRNA guanosine(34) transglycosylase Tgt	-
ODQ18_RS01800 (ODQ18_01800)	yajC	345017..345283 (+)	267	WP_004398708.1	preprotein translocase subunit YajC	-
ODQ18_RS01805 (ODQ18_01805)	-	345340..345729 (-)	390	WP_031315243.1	TIGR04086 family membrane protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22584.08 Da Isoelectric Point: 5.4072

                                >NTDB_id=640204 ODQ18_RS01775 WP_003229717.1 340937..341542(+) (ruvA) [Bacillus subtilis strain 11060]

MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP

KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL

EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=640204 ODQ18_RS01775 WP_003229717.1 340937..341542(+) (ruvA) [Bacillus subtilis strain 11060]

GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA

GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAGGAAACGATTTTTACATACCATCATATCAGAGAGGATG

CTTTTTCGCTTTACGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG

AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT

GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATAATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC

CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT

GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC

AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	O05392

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408

Detailed information NTG0640204