Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FH100_RS04070 Genome accession   NZ_CP090011
Coordinates   817399..817914 (-) Length   171 a.a.
NCBI ID   WP_002447969.1    Uniprot ID   A0A8I1BDZ2
Organism   Staphylococcus hominis strain acrlg     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 812399..822914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH100_RS04045 (FH100_04035) - 813873..814502 (+) 630 WP_002488102.1 NDxxF motif lipoprotein -
  FH100_RS04050 (FH100_04040) - 814600..815178 (-) 579 WP_002488113.1 histidine phosphatase family protein -
  FH100_RS04055 (FH100_04045) - 815457..815705 (-) 249 WP_002447983.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  FH100_RS04060 (FH100_04050) - 815987..816931 (-) 945 WP_002488109.1 hypothetical protein -
  FH100_RS04065 (FH100_04055) rpsR 817115..817357 (-) 243 WP_002447994.1 30S ribosomal protein S18 -
  FH100_RS04070 (FH100_04060) ssbA 817399..817914 (-) 516 WP_002447969.1 single-stranded DNA-binding protein Machinery gene
  FH100_RS04075 (FH100_04065) rpsF 817936..818232 (-) 297 WP_002447961.1 30S ribosomal protein S6 -
  FH100_RS04080 (FH100_04070) - 818481..818672 (+) 192 WP_002447995.1 hypothetical protein -
  FH100_RS04085 (FH100_04075) ychF 818741..819838 (-) 1098 WP_002447976.1 redox-regulated ATPase YchF -
  FH100_RS04090 (FH100_04080) - 819850..820053 (-) 204 WP_070653586.1 DUF951 domain-containing protein -
  FH100_RS04095 (FH100_04085) - 820074..820952 (-) 879 WP_002448012.1 mechanosensitive ion channel family protein -
  FH100_RS04100 (FH100_04090) - 821083..821907 (-) 825 WP_002488097.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18841.33 Da        Isoelectric Point: 4.9265

>NTDB_id=640172 FH100_RS04070 WP_002447969.1 817399..817914(-) (ssbA) [Staphylococcus hominis strain acrlg]
MINRVVLVGRLTKDPEYRSTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRHQGNNDFQDYGQGFGGSQSGQNTSYNNNNNRASNNNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=640172 FH100_RS04070 WP_002447969.1 817399..817914(-) (ssbA) [Staphylococcus hominis strain acrlg]
ATGATAAATCGAGTTGTATTAGTAGGTCGTTTAACTAAGGATCCAGAATACAGAAGTACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAACCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACGTTGTTGTAT
TTAGAAGACAAGCAGAAAACGTAAATAACTATCTTTCAAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATATTTGTCACTGAAGTCGTAGCGGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCACAAGGTGGACAACGTCATCAAGGAAATAATGATTTCCAAGATTATGGCCAAGGATTTGGTGGTTCACAATCAGGAC
AAAATACATCTTATAATAATAATAACAATCGTGCATCAAACAATAATCAATCAGATAACCCATTTGCAAATGCAAATGGC
CCAATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.111

100

0.643
  ssb Latilactobacillus sakei subsp. sakei 23K

54.913

100

0.556
  ssb Glaesserella parasuis strain SC1401

34.043

100

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.988

0.374