Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   LV497_RS02190 Genome accession   NZ_CP090007
Coordinates   576510..578003 (-) Length   497 a.a.
NCBI ID   WP_022496730.1    Uniprot ID   A0AB33Z9R9
Organism   Streptococcus salivarius strain SALI-10     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 571510..583003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS02160 (LV497_02160) - 571639..572016 (+) 378 WP_022496273.1 GntR family transcriptional regulator -
  LV497_RS02165 (LV497_02165) - 572021..572719 (+) 699 WP_022496274.1 ABC transporter ATP-binding protein -
  LV497_RS02170 (LV497_02170) - 572731..573516 (+) 786 WP_037611821.1 hypothetical protein -
  LV497_RS02175 (LV497_02175) amiF 573567..574496 (-) 930 WP_022496727.1 ATP-binding cassette domain-containing protein Regulator
  LV497_RS02180 (LV497_02180) amiE 574489..575574 (-) 1086 WP_022496728.1 ABC transporter ATP-binding protein Regulator
  LV497_RS02185 (LV497_02185) amiD 575584..576510 (-) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  LV497_RS02190 (LV497_02190) amiC 576510..578003 (-) 1494 WP_022496730.1 ABC transporter permease Regulator
  LV497_RS02195 (LV497_02195) amiA 578064..580034 (-) 1971 WP_022496731.1 peptide ABC transporter substrate-binding protein Regulator
  LV497_RS02200 (LV497_02200) amiA 580216..582186 (-) 1971 WP_037611823.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55890.70 Da        Isoelectric Point: 10.0616

>NTDB_id=640100 LV497_RS02190 WP_022496730.1 576510..578003(-) (amiC) [Streptococcus salivarius strain SALI-10]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERMGYIEYYDTKELQEKAS
SVDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYAHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKVSSV
DIYSRTYKSPSQADARDRSYYGDDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGIL
TFLLSLPTIALVYIIRLIGSKIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=640100 LV497_RS02190 WP_022496730.1 576510..578003(-) (amiC) [Streptococcus salivarius strain SALI-10]
ATGAAAAAATACATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAACAAGATTGCTAAGACAGCCGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTATGGGTTATATCGAGTACTACGACACCAAAGAGTTGCAGGAGAAAGCTAGC
TCAGTTGACAAGTCGGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGCAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GTTTCTATGCACACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTCGGTTCAGGAACTAAGCATAAATACTTGCTTTACTTTAACAG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAACCTTGGTACATCTTACCCAACCTATGCTGAGCAGGGTGTTC
TTGATGTTATTACACAAGGACAAGGGCAAACACAAAGCTCTGAGGTCAACTTCCCTACTGGTAAGAAAGTATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCTAGGGATCGTTCTTACTATGGTGATGACCCTTACAC
AGCTACTAAGAGTCGCTACCAGTACCCATCAATGGTGACAAGTTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAACACACTCTTTGATAGTGTGTCAACTGGTATCTTG
ACTTTCTTGCTCTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTAAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTAATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCCATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTCCGTTTTGCACGCGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAATGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATCGTTAG
TGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATTGACTCAGTTCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCCCTTACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATAATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

98.793

100

0.988
  amiC Streptococcus thermophilus LMG 18311

96.982

100

0.97
  amiC Streptococcus thermophilus LMD-9

96.579

100

0.966