Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   LV497_RS02175 Genome accession   NZ_CP090007
Coordinates   573567..574496 (-) Length   309 a.a.
NCBI ID   WP_022496727.1    Uniprot ID   -
Organism   Streptococcus salivarius strain SALI-10     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 568567..579496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS02150 (LV497_02150) - 569852..570670 (-) 819 WP_022496271.1 Cof-type HAD-IIB family hydrolase -
  LV497_RS02155 (LV497_02155) - 570663..571457 (-) 795 WP_022496272.1 HAD family hydrolase -
  LV497_RS02160 (LV497_02160) - 571639..572016 (+) 378 WP_022496273.1 GntR family transcriptional regulator -
  LV497_RS02165 (LV497_02165) - 572021..572719 (+) 699 WP_022496274.1 ABC transporter ATP-binding protein -
  LV497_RS02170 (LV497_02170) - 572731..573516 (+) 786 WP_037611821.1 hypothetical protein -
  LV497_RS02175 (LV497_02175) amiF 573567..574496 (-) 930 WP_022496727.1 ATP-binding cassette domain-containing protein Regulator
  LV497_RS02180 (LV497_02180) amiE 574489..575574 (-) 1086 WP_022496728.1 ABC transporter ATP-binding protein Regulator
  LV497_RS02185 (LV497_02185) amiD 575584..576510 (-) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  LV497_RS02190 (LV497_02190) amiC 576510..578003 (-) 1494 WP_022496730.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35004.12 Da        Isoelectric Point: 7.0886

>NTDB_id=640097 LV497_RS02175 WP_022496727.1 573567..574496(-) (amiF) [Streptococcus salivarius strain SALI-10]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKKIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYNPNQHDYSVDKPEMVEVRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=640097 LV497_RS02175 WP_022496727.1 573567..574496(-) (amiF) [Streptococcus salivarius strain SALI-10]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACCACTATCGGGCGTG
CCATTATTGGTCTAAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGACACTTGTCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATCCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTCGA
TTATATCTTGTCTGAGGGCTTGCATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCTAAAATCAAGAAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATTGGG
ATTGCACGTTCCTTGGTCATGCAACCTGATTTGGTTATCGCTGACGAACCCATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGACTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATAATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTTGAAGTACGTCCAGGACACTTCGTTT
GGGGTAACAAGGCCGAAATCGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.676

100

0.997
  amiF Streptococcus thermophilus LMG 18311

97.735

100

0.977
  amiF Streptococcus thermophilus LMD-9

97.411

100

0.974