Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   ODS73_RS00280 Genome accession   NZ_CP107038
Coordinates   40176..40412 (+) Length   78 a.a.
NCBI ID   WP_000939544.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BM6001     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 35176..45412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODS73_RS00270 (ODS73_00270) - 38869..39078 (+) 210 Protein_47 transposase -
  ODS73_RS00275 (ODS73_00275) - 39113..39910 (-) 798 Protein_48 transposase -
  ODS73_RS00280 (ODS73_00280) comW 40176..40412 (+) 237 WP_000939544.1 sigma(X)-activator ComW Regulator
  ODS73_RS00285 (ODS73_00285) - 40643..41929 (+) 1287 WP_000205044.1 adenylosuccinate synthase -
  ODS73_RS00290 (ODS73_00290) - 42193..43341 (-) 1149 WP_000876727.1 site-specific integrase -
  ODS73_RS00295 (ODS73_00295) - 43512..44114 (-) 603 WP_370597176.1 HIRAN domain-containing protein -
  ODS73_RS12145 - 44229..44426 (-) 198 Protein_53 hypothetical protein -
  ODS73_RS00300 (ODS73_00300) - 44439..45194 (-) 756 WP_000069476.1 XRE family transcriptional regulator -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9667.10 Da        Isoelectric Point: 6.4701

>NTDB_id=640072 ODS73_RS00280 WP_000939544.1 40176..40412(+) (comW) [Streptococcus pneumoniae strain BM6001]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCHRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=640072 ODS73_RS00280 WP_000939544.1 40176..40412(+) (comW) [Streptococcus pneumoniae strain BM6001]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCATAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

97.436

100

0.974
  comW Streptococcus pneumoniae D39

97.436

100

0.974
  comW Streptococcus pneumoniae R6

97.436

100

0.974
  comW Streptococcus pneumoniae TIGR4

97.436

100

0.974
  comW Streptococcus mitis SK321

78.205

100

0.782
  comW Streptococcus mitis NCTC 12261

77.922

98.718

0.769