Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LS684_RS20415 Genome accession   NZ_CP089997
Coordinates   4078997..4079503 (-) Length   168 a.a.
NCBI ID   WP_233808884.1    Uniprot ID   -
Organism   Cytobacillus spongiae strain CY-G     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4073997..4084503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS684_RS20390 (LS684_20390) - 4074584..4075132 (-) 549 WP_233808874.1 2TM domain-containing protein -
  LS684_RS20395 (LS684_20395) - 4075219..4075824 (+) 606 WP_233808876.1 TetR family transcriptional regulator C-terminal domain-containing protein -
  LS684_RS20400 (LS684_20400) - 4076064..4078064 (-) 2001 WP_233808878.1 methyl-accepting chemotaxis protein -
  LS684_RS20405 (LS684_20405) - 4078300..4078479 (-) 180 WP_233808880.1 hypothetical protein -
  LS684_RS20410 (LS684_20410) rpsR 4078702..4078941 (-) 240 WP_233808882.1 30S ribosomal protein S18 -
  LS684_RS20415 (LS684_20415) ssbA 4078997..4079503 (-) 507 WP_233808884.1 single-stranded DNA-binding protein Machinery gene
  LS684_RS20420 (LS684_20420) rpsF 4079577..4079864 (-) 288 WP_233808886.1 30S ribosomal protein S6 -
  LS684_RS20425 (LS684_20425) - 4080036..4081187 (-) 1152 WP_233808888.1 glycosyltransferase family 1 protein -
  LS684_RS20430 (LS684_20430) - 4081255..4081773 (-) 519 WP_233808890.1 phosphatase PAP2 family protein -
  LS684_RS20435 (LS684_20435) ychF 4081936..4083036 (-) 1101 WP_233808892.1 redox-regulated ATPase YchF -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18554.35 Da        Isoelectric Point: 4.7821

>NTDB_id=639935 LS684_RS20415 WP_233808884.1 4078997..4079503(-) (ssbA) [Cytobacillus spongiae strain CY-G]
MMNRVVLVGRLTKDPELRYTPSGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQTR
SFEGQDGKRVYVTEVVAESVQFLEPRNASGGNNSYSGGSREQDFPFGGSNNQNQRQQPNNNNNGFTSIDKDPFANDGQID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=639935 LS684_RS20415 WP_233808884.1 4078997..4079503(-) (ssbA) [Cytobacillus spongiae strain CY-G]
ATGATGAATCGCGTAGTTCTAGTTGGCCGTTTAACCAAAGATCCTGAATTGAGATATACACCAAGTGGAGTTGCTGTTGC
AACGTTTACATTGGCTGTAAACCGTACATTTACGAATCAACAGGGAGAACGTGAAGCGGACTTTATCAACTGTGTGGTAT
GGAGAAAACCAGCTGAAAATGTGGCAAACTTTTTGAAAAAAGGAAGCCTTGCTGGTGTCGATGGACGCATTCAAACGCGC
AGTTTTGAAGGACAAGACGGTAAAAGAGTGTATGTGACAGAAGTTGTTGCTGAAAGTGTACAATTTCTTGAGCCGAGAAA
TGCTTCAGGTGGAAACAACAGCTACAGCGGTGGTTCAAGAGAACAAGATTTCCCGTTTGGTGGAAGCAACAATCAGAATC
AACGTCAACAACCAAACAACAACAACAACGGTTTTACATCAATAGATAAAGATCCATTTGCAAATGACGGTCAAATCGAC
ATTTCAGATGATGATCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.598

100

0.72
  ssb Latilactobacillus sakei subsp. sakei 23K

56.906

100

0.613
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

63.095

0.399
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.727

78.571

0.375