Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LVW35_RS25545 Genome accession   NZ_CP089985
Coordinates   5577524..5578039 (-) Length   171 a.a.
NCBI ID   WP_017849542.1    Uniprot ID   A0A6I3WGC1
Organism   Pseudomonas sp. HN11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5572524..5583039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVW35_RS25520 (LVW35_25520) - 5572768..5573877 (-) 1110 WP_233892551.1 DUF3182 family protein -
  LVW35_RS25525 (LVW35_25525) - 5574048..5575007 (-) 960 WP_233892552.1 GlxA family transcriptional regulator -
  LVW35_RS25530 (LVW35_25530) - 5575104..5575664 (+) 561 WP_233892553.1 cysteine hydrolase family protein -
  LVW35_RS25535 (LVW35_25535) tam 5575686..5576447 (-) 762 WP_233892555.1 trans-aconitate 2-methyltransferase -
  LVW35_RS25540 (LVW35_25540) - 5576549..5577466 (+) 918 WP_233892556.1 LysR family transcriptional regulator -
  LVW35_RS25545 (LVW35_25545) ssb 5577524..5578039 (-) 516 WP_017849542.1 single-stranded DNA-binding protein Machinery gene
  LVW35_RS25550 (LVW35_25550) - 5578049..5579443 (-) 1395 WP_233892558.1 MFS transporter -
  LVW35_RS25555 (LVW35_25555) uvrA 5579622..5582456 (+) 2835 WP_233892559.1 excinuclease ABC subunit UvrA -
  LVW35_RS25560 (LVW35_25560) bfr 5582523..5582987 (-) 465 WP_233892561.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18989.15 Da        Isoelectric Point: 5.9455

>NTDB_id=639712 LVW35_RS25545 WP_017849542.1 5577524..5578039(-) (ssb) [Pseudomonas sp. HN11]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAA
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=639712 LVW35_RS25545 WP_017849542.1 5577524..5578039(-) (ssb) [Pseudomonas sp. HN11]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACGTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCAGAGATCGCCGGTGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAGATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAAGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCTCGTCCGCAGCCAAGCCAGCAGCCACAACGTGAGTCGCGCCCGGCGCCACAACAGGCCGCGCCGCAGCCGGCTGCG
GATTTCGACAGCTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I3WGC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.286

100

0.596
  ssb Neisseria gonorrhoeae MS11

48.315

100

0.503
  ssb Glaesserella parasuis strain SC1401

44.792

100

0.503
  ssb Neisseria meningitidis MC58

46.591

100

0.48