Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LU301_RS08175 Genome accession   NZ_CP089978
Coordinates   1648464..1649336 (+) Length   290 a.a.
NCBI ID   WP_305269640.1    Uniprot ID   -
Organism   Moraxella sp. ZY210820     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1643464..1654336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU301_RS08155 (LU301_08140) rnt 1644495..1645157 (+) 663 WP_305274029.1 ribonuclease T -
  LU301_RS08165 (LU301_08150) pilB 1645495..1647216 (+) 1722 WP_305269636.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LU301_RS08170 (LU301_08155) pilC 1647238..1648464 (+) 1227 WP_305269638.1 type II secretion system F family protein Machinery gene
  LU301_RS08175 (LU301_08160) pilD 1648464..1649336 (+) 873 WP_305269640.1 A24 family peptidase Machinery gene
  LU301_RS08180 (LU301_08165) coaE 1649333..1649944 (+) 612 WP_305269642.1 dephospho-CoA kinase -
  LU301_RS08185 (LU301_08170) - 1649958..1650923 (-) 966 WP_305269645.1 YheT family hydrolase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32179.44 Da        Isoelectric Point: 8.2148

>NTDB_id=639631 LU301_RS08175 WP_305269640.1 1648464..1649336(+) (pilD) [Moraxella sp. ZY210820]
MQNLILLFTEMPALLYVVVGILSLCVGSFLNVVIYRLPKIMENEWKEEIHYFQNPDQPYPEQEKFTLSVPASTCPKCQHR
IRWYENIPVISWAVLLRGKCSGCKNPISARYPFVELATMLASLVVVYNFGLSLTMIAGVIFTWILIALIGIDFDTQLLPD
RLVYPLLGLGLAVNSFGLFISPAQAIWGTLIGFLSLWSVCVIFKLITSKQGMGHGDFKLLAAVGAWLGTGLLPFIIFTSA
VLGSIVGGILFAIYKESRPFAFGPYIAIAAWIALLWGNQIMASYLGLFIK

Nucleotide


Download         Length: 873 bp        

>NTDB_id=639631 LU301_RS08175 WP_305269640.1 1648464..1649336(+) (pilD) [Moraxella sp. ZY210820]
ATGCAAAACTTAATCCTATTATTTACCGAAATGCCTGCACTACTTTATGTAGTTGTAGGCATTTTGAGTTTATGTGTAGG
TAGCTTTTTAAATGTAGTGATTTATCGTCTACCTAAAATCATGGAAAATGAATGGAAAGAAGAAATTCATTATTTCCAAA
ATCCAGACCAACCTTATCCTGAACAAGAAAAATTTACCTTAAGTGTTCCTGCCTCAACCTGCCCTAAATGCCAACATCGT
ATTCGTTGGTATGAAAATATTCCTGTGATTAGCTGGGCTGTTTTATTACGTGGTAAATGTAGTGGCTGTAAAAATCCTAT
TTCTGCACGCTATCCATTTGTAGAGTTAGCTACTATGCTTGCTTCTCTCGTAGTAGTTTATAATTTTGGCTTATCATTAA
CAATGATTGCAGGTGTGATTTTTACATGGATATTAATCGCACTGATTGGTATTGATTTTGATACACAATTATTACCAGAC
CGTTTGGTTTATCCATTACTTGGTTTGGGACTTGCTGTAAATAGTTTTGGATTATTTATCTCTCCAGCTCAAGCCATTTG
GGGAACTTTAATCGGTTTCTTATCTCTTTGGTCAGTATGTGTTATTTTCAAACTGATTACAAGTAAACAAGGCATGGGGC
ATGGTGATTTTAAATTACTCGCTGCAGTGGGTGCGTGGCTAGGTACTGGCTTATTACCCTTTATTATTTTTACTTCAGCA
GTATTAGGTTCAATTGTAGGTGGTATCTTATTTGCTATTTATAAAGAAAGTCGTCCTTTTGCTTTTGGCCCATATATTGC
TATTGCTGCATGGATTGCTTTATTATGGGGTAATCAAATTATGGCATCTTATTTAGGCTTATTTATCAAATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-129)

Type IV leader peptidase family (Peptidase_A24)

(140-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

58.741

98.621

0.579
  pilD Acinetobacter nosocomialis M2

58.392

98.621

0.576
  pilD Vibrio cholerae strain A1552

50.89

96.897

0.493
  pilD Vibrio campbellii strain DS40M4

50.534

96.897

0.49
  pilD Neisseria gonorrhoeae MS11

45.85

87.241

0.4