Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ORIO_RS02265 Genome accession   NZ_CP089965
Coordinates   434879..435367 (-) Length   162 a.a.
NCBI ID   WP_011907508.1    Uniprot ID   -
Organism   Cereibacter azotoformans strain ORIO     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 429879..440367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORIO_RS02225 (ORIO_02225) - 430220..432052 (+) 1833 WP_011907502.1 hypothetical protein -
  ORIO_RS02230 (ORIO_02230) - 432052..432375 (+) 324 WP_238823047.1 hypothetical protein -
  ORIO_RS02235 (ORIO_02235) - 432461..432733 (+) 273 WP_080517412.1 hypothetical protein -
  ORIO_RS02240 (ORIO_02240) - 432747..432992 (+) 246 WP_011907505.1 hypothetical protein -
  ORIO_RS02245 (ORIO_02245) - 432982..433455 (+) 474 WP_011907506.1 lysozyme -
  ORIO_RS02250 (ORIO_02250) - 433452..433796 (+) 345 WP_011907507.1 hypothetical protein -
  ORIO_RS02255 (ORIO_02255) - 433744..433971 (+) 228 WP_152334753.1 hypothetical protein -
  ORIO_RS24080 - 434417..434615 (-) 199 Protein_447 transposase -
  ORIO_RS02260 (ORIO_02260) - 434620..434752 (+) 133 Protein_448 IS5/IS1182 family transposase -
  ORIO_RS02265 (ORIO_02265) ssb 434879..435367 (-) 489 WP_011907508.1 single-stranded DNA-binding protein Machinery gene
  ORIO_RS02270 (ORIO_02270) - 435580..436194 (+) 615 WP_011907509.1 lytic transglycosylase domain-containing protein -
  ORIO_RS02275 (ORIO_02275) serS 436251..437543 (-) 1293 WP_011907510.1 serine--tRNA ligase -
  ORIO_RS02280 (ORIO_02280) - 437631..438203 (-) 573 WP_011907511.1 superoxide dismutase family protein -
  ORIO_RS02285 (ORIO_02285) yajC 438451..438780 (+) 330 WP_011907512.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17833.51 Da        Isoelectric Point: 5.9821

>NTDB_id=639524 ORIO_RS02265 WP_011907508.1 434879..435367(-) (ssb) [Cereibacter azotoformans strain ORIO]
MAGSVNKVIIIGNLGRDPEVRSFQNGGKVVNLRIATSEQWRDRASGERKERTEWHSVAIFDENLARVAEQYLRKGSTVYI
EGQLETRKWQDQSGQDRYTTEVVLRPFRSALTMLGGRGDSAGSGGGYEDRGGSESYDNFGGSRGNAPSGGGRRSDLDDEI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=639524 ORIO_RS02265 WP_011907508.1 434879..435367(-) (ssb) [Cereibacter azotoformans strain ORIO]
ATGGCGGGCTCGGTCAACAAGGTCATCATCATCGGCAATCTCGGCCGCGATCCCGAGGTTCGGAGCTTTCAGAACGGCGG
GAAGGTCGTGAACCTGCGCATCGCCACATCCGAGCAGTGGCGCGACCGCGCCTCGGGCGAGCGGAAGGAGCGGACCGAGT
GGCATTCGGTTGCGATCTTCGACGAGAACCTCGCCCGGGTGGCCGAGCAATATCTGCGCAAGGGCTCGACGGTCTATATC
GAGGGCCAGCTCGAGACGCGGAAGTGGCAGGACCAGTCGGGCCAGGACCGCTACACGACCGAGGTCGTGCTGCGCCCGTT
CCGCAGCGCCCTGACGATGCTCGGAGGCCGCGGAGACAGCGCGGGCTCCGGCGGCGGCTACGAAGACCGCGGCGGCTCGG
AAAGCTACGACAACTTCGGAGGCTCCCGCGGCAACGCCCCCTCGGGTGGCGGTCGGCGGAGCGATCTGGATGACGAGATC
CCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.867

100

0.543
  ssb Glaesserella parasuis strain SC1401

46.237

100

0.531
  ssb Neisseria gonorrhoeae MS11

41.436

100

0.463
  ssb Neisseria meningitidis MC58

40.556

100

0.451