Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LVE68_RS13560 Genome accession   NZ_CP089928
Coordinates   3125113..3125703 (+) Length   196 a.a.
NCBI ID   WP_232940921.1    Uniprot ID   -
Organism   Microbulbifer sp. YPW16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3120113..3130703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVE68_RS13550 (LVE68_13550) - 3122237..3123652 (+) 1416 WP_232940919.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  LVE68_RS13555 (LVE68_13555) - 3123766..3124935 (+) 1170 WP_232940920.1 MFS transporter -
  LVE68_RS13560 (LVE68_13560) ssb 3125113..3125703 (+) 591 WP_232940921.1 single-stranded DNA-binding protein Machinery gene
  LVE68_RS13565 (LVE68_13565) - 3125718..3126560 (+) 843 WP_232940922.1 sugar nucleotide-binding protein -
  LVE68_RS13570 (LVE68_13570) fabB 3126707..3127930 (-) 1224 WP_232940923.1 beta-ketoacyl-ACP synthase I -
  LVE68_RS13575 (LVE68_13575) fabA 3128000..3128524 (-) 525 WP_232940924.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  LVE68_RS13580 (LVE68_13580) galU 3128832..3129674 (+) 843 WP_232940925.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21210.15 Da        Isoelectric Point: 5.2615

>NTDB_id=639187 LVE68_RS13560 WP_232940921.1 3125113..3125703(+) (ssb) [Microbulbifer sp. YPW16]
MAKGINKVILIGNLGADPETRYMPSGGAVTNVNLATSETWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYLRKGSKVYIE
GSLRTRKWQDKNSGQDRYTTEIVASEMQMLDSRGGDQGGYGQGMGGQGMGNQGGYGQQNQGGFQQGGDPYAQGNQGRSAP
SPMAPSNQPPSNQPSQQPNQAPAGGFDNSFDDDIPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=639187 LVE68_RS13560 WP_232940921.1 3125113..3125703(+) (ssb) [Microbulbifer sp. YPW16]
ATGGCCAAGGGTATTAACAAAGTCATCCTGATCGGCAATCTGGGCGCAGACCCGGAGACCCGCTATATGCCGAGCGGCGG
TGCGGTAACCAACGTCAACCTGGCGACTTCCGAGACCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAGCGCACCGAGT
GGCACCGTGTGGTGTTCTTCAATCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCAAGGTCTACATTGAG
GGCTCACTGCGCACGCGCAAGTGGCAGGACAAGAACAGCGGCCAGGACCGCTACACCACCGAGATCGTTGCCAGCGAAAT
GCAGATGCTCGACAGCCGCGGCGGTGACCAGGGCGGCTACGGCCAGGGTATGGGTGGCCAGGGCATGGGTAACCAGGGCG
GTTACGGCCAGCAGAACCAGGGTGGTTTCCAGCAGGGCGGCGACCCCTATGCACAGGGTAACCAGGGACGCTCTGCTCCC
TCGCCCATGGCACCCTCGAACCAGCCGCCTTCCAATCAGCCGTCCCAGCAGCCGAACCAGGCGCCGGCCGGTGGTTTCGA
CAACAGCTTCGATGACGATATTCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.33

100

0.556
  ssb Vibrio cholerae strain A1552

53.266

100

0.541
  ssb Neisseria gonorrhoeae MS11

46.667

99.49

0.464
  ssb Neisseria meningitidis MC58

44.845

98.98

0.444