Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LVE68_RS12125 Genome accession   NZ_CP089928
Coordinates   2816231..2817307 (+) Length   358 a.a.
NCBI ID   WP_232940667.1    Uniprot ID   -
Organism   Microbulbifer sp. YPW16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2811231..2822307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVE68_RS12115 (LVE68_12115) - 2812800..2813282 (+) 483 WP_232940665.1 chemotaxis protein CheW -
  LVE68_RS12120 (LVE68_12120) - 2813391..2816075 (-) 2685 WP_232940666.1 penicillin-binding protein 1A -
  LVE68_RS12125 (LVE68_12125) pilM 2816231..2817307 (+) 1077 WP_232940667.1 pilus assembly protein PilM Machinery gene
  LVE68_RS12130 (LVE68_12130) - 2817310..2817903 (+) 594 WP_232940668.1 PilN domain-containing protein -
  LVE68_RS12135 (LVE68_12135) - 2817916..2818536 (+) 621 WP_232940669.1 type 4a pilus biogenesis protein PilO -
  LVE68_RS12140 (LVE68_12140) - 2818533..2819063 (+) 531 WP_232940670.1 pilus assembly protein PilP -
  LVE68_RS12145 (LVE68_12145) pilQ 2819063..2821282 (+) 2220 WP_232940671.1 type IV pilus secretin PilQ -
  LVE68_RS12150 (LVE68_12150) aroK 2821292..2821819 (+) 528 WP_255701182.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38865.16 Da        Isoelectric Point: 4.4727

>NTDB_id=639185 LVE68_RS12125 WP_232940667.1 2816231..2817307(+) (pilM) [Microbulbifer sp. YPW16]
MGMLPFLNKGPRAMLGLDISSTAVKLLELSRNGSKYRVECYAVEPLPPNAVVDKNINDIEATAEAIRKVVRRSKTRLRRA
AVAVSGSAVITKTLEMASDLNDDALEAQIALEADQYIPYPLDEVNLDFEVQGPSSRGEGQVEVLLAACRSENIDQRVTSL
AGADLQAAVVDVEAYAIERAYTLLERQFPPQEQLVVAVVDIGATMSALSVLVDGKTVYTREQLFGGRQLTDEIQRRYGLS
AEEAGLAKRQGGSGLPDDYYPEVLEPFRDAVIQQVTRSLQFFYSSTSYSDVDYILLAGGVGAMDGLADLVSEKLGKPTVV
ANPFHDMAVASRVNRQALASEAPSLMIAAGLAMREREF

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=639185 LVE68_RS12125 WP_232940667.1 2816231..2817307(+) (pilM) [Microbulbifer sp. YPW16]
ATGGGGATGCTCCCTTTTCTCAATAAAGGTCCCAGAGCCATGCTGGGCCTCGATATTAGCTCGACCGCGGTAAAGTTGCT
GGAGCTGAGTCGCAACGGCAGCAAATACCGGGTCGAATGCTATGCAGTCGAGCCGCTGCCGCCCAATGCCGTTGTGGATA
AGAATATCAACGATATCGAGGCAACGGCGGAAGCAATCCGCAAAGTTGTGCGTCGCTCCAAGACCCGCCTGCGCCGTGCC
GCGGTTGCCGTGTCGGGCTCGGCAGTGATTACCAAGACCCTGGAAATGGCCTCCGACCTCAATGACGACGCACTGGAAGC
GCAGATCGCCCTGGAGGCGGACCAGTATATCCCCTACCCGCTGGATGAGGTGAACCTGGATTTTGAAGTGCAGGGTCCTT
CCAGTCGCGGTGAGGGCCAGGTAGAGGTCCTGCTGGCGGCCTGTCGCAGCGAGAATATCGACCAGCGGGTCACCTCCCTG
GCGGGGGCCGACCTGCAGGCAGCCGTGGTGGACGTAGAGGCCTACGCAATCGAGCGCGCCTATACCCTGCTGGAGCGCCA
GTTCCCGCCGCAGGAGCAACTGGTGGTGGCGGTCGTGGATATCGGCGCCACCATGAGTGCGCTGTCGGTACTTGTTGATG
GTAAGACTGTATACACGCGCGAGCAGCTGTTCGGCGGCCGCCAGCTTACCGATGAGATTCAGCGCCGCTACGGCCTGTCC
GCGGAAGAGGCAGGGCTGGCCAAGCGCCAGGGCGGCAGCGGCCTGCCCGATGACTATTACCCGGAGGTGCTGGAGCCGTT
CCGGGACGCGGTGATCCAGCAGGTGACCCGCTCCCTGCAGTTTTTCTATTCCTCTACGTCATACAGTGACGTGGATTACA
TCCTGCTCGCCGGTGGCGTGGGGGCGATGGACGGGCTGGCCGACCTGGTCAGTGAGAAGCTGGGCAAGCCCACGGTCGTG
GCCAATCCTTTTCACGATATGGCAGTGGCCTCGCGGGTTAACCGCCAGGCGCTGGCGAGCGAGGCCCCCTCACTGATGAT
TGCAGCCGGCCTGGCAATGCGCGAACGGGAGTTCTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(16-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50.568

98.324

0.497
  comM Acinetobacter nosocomialis M2

50.568

98.324

0.497
  comM Acinetobacter baylyi ADP1

46.875

98.324

0.461
  pilM Legionella pneumophila strain ERS1305867

44.101

99.441

0.439