Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LVB87_RS06940 Genome accession   NZ_CP089925
Coordinates   1462881..1463939 (+) Length   352 a.a.
NCBI ID   WP_232900167.1    Uniprot ID   -
Organism   Lysobacter sp. KIS68-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1457881..1468939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVB87_RS06930 (LVB87_06930) - 1459436..1460083 (-) 648 WP_232900164.1 hypothetical protein -
  LVB87_RS06935 (LVB87_06935) - 1460154..1462649 (-) 2496 WP_232900165.1 penicillin-binding protein 1A -
  LVB87_RS06940 (LVB87_06940) pilM 1462881..1463939 (+) 1059 WP_232900167.1 pilus assembly protein PilM Machinery gene
  LVB87_RS06945 (LVB87_06945) - 1463939..1464670 (+) 732 WP_232900168.1 PilN domain-containing protein -
  LVB87_RS06950 (LVB87_06950) pilO 1464667..1465353 (+) 687 WP_232900170.1 type 4a pilus biogenesis protein PilO -
  LVB87_RS06955 (LVB87_06955) - 1465353..1465889 (+) 537 WP_232900171.1 pilus assembly protein PilP -
  LVB87_RS06960 (LVB87_06960) - 1465900..1467834 (+) 1935 WP_232900173.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37575.07 Da        Isoelectric Point: 4.3836

>NTDB_id=639134 LVB87_RS06940 WP_232900167.1 1462881..1463939(+) (pilM) [Lysobacter sp. KIS68-7]
MGLITNSQPPLIGVDISSTAVKLLQLSRAGNRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIKRAVARSGARARHAAAA
VAGSAVITKIIPMPADLDEDDLESQVELEAVNYIPYPIEEVNLDFEVLGAMPGNAEMVQVLLAASRTENVDARVSALELG
GLTAKVMDVEAFAIENAFSLLADGLSAPRDGIVAMVDTGATMTTLNILRNGRSLYSREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPESYDIEVLEPFKEAMVQQVSRLLQFFYAGSEFNRVDQIVLAGGCASIPGIAAMVEEQLGVPTVVANPLA
QMTLGPRVQAHALAQDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=639134 LVB87_RS06940 WP_232900167.1 1462881..1463939(+) (pilM) [Lysobacter sp. KIS68-7]
GTGGGACTGATCACAAATAGTCAGCCGCCGCTGATTGGCGTCGACATCAGCTCGACCGCCGTAAAGCTGCTGCAGCTCTC
CCGTGCCGGGAATCGCTACCGCGTGGAGCATTACGCGGTCGAGCCGCTGCCGCCCAATGCGGTCGTGGAAAAGAACATCG
TCGAGGTCGAGGCCGTCGGCGAGGCCATCAAGCGGGCGGTCGCCCGCTCCGGGGCCCGGGCGCGGCATGCCGCGGCGGCC
GTGGCGGGGTCGGCGGTGATCACCAAGATCATCCCGATGCCGGCGGACCTGGACGAGGACGACCTGGAATCCCAGGTCGA
GCTCGAGGCCGTCAACTACATCCCGTACCCGATCGAGGAAGTGAATCTCGACTTCGAGGTCCTCGGGGCCATGCCCGGCA
ACGCGGAAATGGTGCAGGTGCTGCTCGCAGCCTCGCGCACCGAGAACGTGGACGCCCGGGTCTCCGCGCTGGAGCTCGGC
GGACTGACCGCGAAGGTCATGGACGTCGAAGCCTTCGCCATCGAGAACGCCTTCTCGCTGCTGGCCGACGGGTTGTCGGC
GCCGCGCGACGGGATCGTCGCGATGGTCGATACCGGCGCGACCATGACCACGCTCAACATCCTGCGCAACGGTCGCAGCC
TGTACAGCCGAGAGCAGGTCTTCGGCGGCAAGCAGCTCACCGACGAAGTCATGCGCCGCTACGGCCTGAGCTACGAAGAA
GCCGGCCTTGCCAAGCGCCAGGGCGGCCTGCCTGAAAGCTACGACATCGAAGTCCTCGAGCCCTTCAAGGAAGCGATGGT
CCAGCAGGTCAGCCGACTCCTGCAGTTCTTCTACGCGGGCAGTGAATTCAACCGCGTCGACCAGATCGTCCTCGCCGGCG
GCTGCGCGTCCATCCCCGGCATCGCCGCGATGGTCGAGGAGCAGCTCGGCGTGCCGACCGTGGTCGCCAACCCGCTGGCG
CAGATGACGCTCGGGCCGCGCGTGCAGGCACATGCCCTCGCACAGGACGCCCCCGCGCTGATGATCGCGTGCGGCCTCGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

53.216

97.159

0.517
  comM Acinetobacter nosocomialis M2

52.924

97.159

0.514
  comM Acinetobacter baylyi ADP1

52.339

97.159

0.509
  pilM Legionella pneumophila strain ERS1305867

44.759

100

0.449