Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LVB87_RS00305 Genome accession   NZ_CP089925
Coordinates   66278..66787 (-) Length   169 a.a.
NCBI ID   WP_232898933.1    Uniprot ID   -
Organism   Lysobacter sp. KIS68-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 61278..71787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVB87_RS00280 (LVB87_00280) - 62109..62621 (-) 513 WP_232898928.1 ESPR-type extended signal peptide-containing protein -
  LVB87_RS00285 (LVB87_00285) rfbD 62777..63673 (-) 897 WP_232898929.1 dTDP-4-dehydrorhamnose reductase -
  LVB87_RS00290 (LVB87_00290) rfbC 63670..64227 (-) 558 WP_232898930.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  LVB87_RS00295 (LVB87_00295) rfbA 64224..65117 (-) 894 WP_232898931.1 glucose-1-phosphate thymidylyltransferase RfbA -
  LVB87_RS00300 (LVB87_00300) rfbB 65114..66169 (-) 1056 WP_232898932.1 dTDP-glucose 4,6-dehydratase -
  LVB87_RS00305 (LVB87_00305) ssb 66278..66787 (-) 510 WP_232898933.1 single-stranded DNA-binding protein Machinery gene
  LVB87_RS00310 (LVB87_00310) - 67002..67625 (-) 624 WP_232898934.1 response regulator transcription factor -
  LVB87_RS00315 (LVB87_00315) - 67885..68205 (-) 321 WP_232898935.1 PilZ domain-containing protein -
  LVB87_RS00320 (LVB87_00320) gcvP 68374..71229 (-) 2856 WP_232898936.1 aminomethyl-transferring glycine dehydrogenase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18223.00 Da        Isoelectric Point: 5.3596

>NTDB_id=639121 LVB87_RS00305 WP_232898933.1 66278..66787(-) (ssb) [Lysobacter sp. KIS68-7]
MARGINKVILVGNLGDDPETKYTQGGMAVTSASLATTSVRKDKDGNSQERTEWHRLKFFGKVAEIAGEYLRKGSQVYVEG
SIRYDKFTGQDGQERYFTDIVVDQMQMLGGRGDGGGGGGGGARQERSGGGERPARSAPQRQERPASAPRDTAPAARDFGD
DFADDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=639121 LVB87_RS00305 WP_232898933.1 66278..66787(-) (ssb) [Lysobacter sp. KIS68-7]
ATGGCACGTGGCATCAACAAGGTGATCCTGGTCGGCAATCTCGGCGACGACCCCGAGACCAAGTACACCCAGGGCGGCAT
GGCCGTGACGTCCGCCAGCCTCGCCACGACCTCCGTGCGCAAGGACAAGGACGGCAACAGCCAGGAACGCACCGAGTGGC
ACCGCCTGAAGTTCTTCGGCAAGGTCGCTGAAATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGGTCTACGTCGAAGGC
TCGATCCGCTACGACAAGTTCACCGGCCAGGACGGGCAGGAGCGCTACTTCACCGACATCGTCGTCGACCAGATGCAGAT
GCTCGGCGGCCGCGGTGATGGCGGCGGTGGCGGTGGCGGCGGCGCACGACAGGAACGCAGCGGCGGCGGTGAACGCCCGG
CGCGTTCGGCACCGCAGCGCCAGGAGCGTCCGGCCAGCGCGCCGCGCGACACCGCGCCGGCAGCGCGCGATTTCGGCGAC
GACTTCGCCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.727

100

0.497
  ssb Neisseria meningitidis MC58

47.701

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.701

100

0.491
  ssb Glaesserella parasuis strain SC1401

42.391

100

0.462