Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LVB77_RS18175 Genome accession   NZ_CP089924
Coordinates   4037034..4038449 (+) Length   471 a.a.
NCBI ID   WP_232907473.1    Uniprot ID   -
Organism   Lysobacter sp. 5GHs7-4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4032034..4043449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVB77_RS18150 (LVB77_18150) - 4032344..4032640 (-) 297 WP_232907465.1 type II toxin-antitoxin system RelE/ParE family toxin -
  LVB77_RS18155 (LVB77_18155) - 4032637..4032927 (-) 291 WP_232907467.1 DUF1778 domain-containing protein -
  LVB77_RS18160 (LVB77_18160) sucD 4033033..4033908 (-) 876 WP_232907468.1 succinate--CoA ligase subunit alpha -
  LVB77_RS18165 (LVB77_18165) sucC 4033921..4035087 (-) 1167 WP_232907469.1 ADP-forming succinate--CoA ligase subunit beta -
  LVB77_RS18170 (LVB77_18170) - 4035349..4036968 (+) 1620 WP_232907472.1 ATP-binding protein -
  LVB77_RS18175 (LVB77_18175) pilR 4037034..4038449 (+) 1416 WP_232907473.1 sigma-54 dependent transcriptional regulator Regulator
  LVB77_RS18180 (LVB77_18180) - 4038490..4039089 (-) 600 WP_232907474.1 class I SAM-dependent methyltransferase -
  LVB77_RS18185 (LVB77_18185) - 4039091..4040122 (-) 1032 WP_232907475.1 glycosyltransferase -
  LVB77_RS18190 (LVB77_18190) - 4040119..4040913 (-) 795 WP_232907476.1 glycosyltransferase family A protein -
  LVB77_RS18195 (LVB77_18195) - 4040925..4041287 (-) 363 WP_232907478.1 EamA family transporter -
  LVB77_RS18200 (LVB77_18200) pilA 4041761..4042180 (+) 420 WP_232907479.1 pilin Machinery gene
  LVB77_RS18205 (LVB77_18205) pilA2 4042537..4042956 (+) 420 WP_232907480.1 pilin Machinery gene

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 50783.15 Da        Isoelectric Point: 6.7671

>NTDB_id=639113 LVB77_RS18175 WP_232907473.1 4037034..4038449(+) (pilR) [Lysobacter sp. 5GHs7-4]
MAETRSALVIDDERDIRELLVMTLGRMGLRCDTASSVSEARSQLSRNRYDLCLTDMRLPDGSGLELIAEISQKHPDTPVA
MITAFGNVEAAVEALKAGAFDFVAKPVELTVLRDLVRHALELNESRRSTADTVASRLYGESPAMAKLRQTIGKVARSQAP
VYIAGESGVGKELVARTIHAEGGRASGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAADGGTLFLDEVAE
LPLPMQVKLLRAIQEKSIRPVGAQAEVVVDVRILSATHKDLAALVADGRFRQDLYYRINVIELRVPPLRERLDDLPGLAS
KVLERLASAQGRAIPRLGDDALEALRAYAFPGNVRELENILERALALAEGELLNASDLRLPRLSTQAPAPATGAPTATAA
APAAAAASVDPRTMNPRDTSTSALPSYIEEIERAAIQQALQENRYNKTRTAAALGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=639113 LVB77_RS18175 WP_232907473.1 4037034..4038449(+) (pilR) [Lysobacter sp. 5GHs7-4]
ATGGCTGAAACTCGTAGTGCACTGGTGATCGACGACGAGCGCGACATACGCGAGTTGTTGGTCATGACTTTGGGCCGCAT
GGGCCTGCGTTGCGATACCGCCTCCAGCGTTTCGGAGGCGCGCAGCCAGCTGTCGCGCAATCGGTACGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGTTCCGGCCTGGAGCTGATCGCCGAGATCAGCCAGAAGCATCCCGACACCCCGGTCGCC
ATGATCACCGCCTTCGGCAATGTCGAGGCCGCGGTGGAAGCGCTCAAGGCCGGTGCCTTCGACTTCGTCGCCAAGCCGGT
CGAGCTGACCGTGCTGCGCGATCTGGTCCGGCACGCGCTGGAACTGAACGAGAGCCGCCGCAGCACCGCCGACACCGTCG
CCTCGCGCCTGTACGGCGAGTCGCCGGCGATGGCGAAACTGCGCCAGACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCG
GTCTACATCGCCGGCGAGTCCGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCACGCCGAAGGCGGCCGCGCCAGCGG
ACCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCT
TCACCGGCGCCCACGCCGACAAGCCCGGCCTGTTCCAGGCCGCCGACGGCGGCACCTTGTTCCTGGACGAAGTCGCCGAG
CTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGATCCGCCCGGTCGGCGCCCAGGCCGAGGT
CGTGGTCGACGTGCGCATCCTCTCGGCCACGCACAAGGATCTGGCCGCGCTGGTCGCCGACGGCCGCTTCCGCCAGGACC
TGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCCTGGACGATCTGCCCGGCCTGGCCAGC
AAGGTGCTAGAGCGCCTCGCCAGCGCCCAGGGCCGCGCGATCCCGCGCCTGGGCGACGACGCACTCGAAGCGCTGCGCGC
CTACGCGTTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTTGAGCGCGCGCTCGCCCTGGCCGAAGGCGAACTGCTCA
ACGCCAGCGACCTGCGCCTGCCGCGCCTGTCGACCCAGGCGCCCGCACCGGCGACCGGCGCACCCACCGCGACCGCCGCC
GCGCCGGCCGCGGCCGCCGCCAGCGTCGATCCGCGCACCATGAACCCGCGCGACACCTCGACCAGCGCCCTGCCCTCGTA
CATCGAGGAAATCGAGCGCGCCGCGATCCAGCAGGCGCTACAGGAAAACCGCTACAACAAAACCCGCACCGCCGCCGCGC
TGGGCATCACCTTCCGCGCGCTGCGCTACAAGCTCAAGAAGCTCGGGATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(138-303)

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.67

99.151

0.611
  pilR Acinetobacter baumannii strain A118

47.708

100

0.486