Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LVB77_RS18015 Genome accession   NZ_CP089924
Coordinates   3990771..3991829 (-) Length   352 a.a.
NCBI ID   WP_232907438.1    Uniprot ID   -
Organism   Lysobacter sp. 5GHs7-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3985771..3996829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVB77_RS17995 (LVB77_17995) - 3986649..3988649 (-) 2001 WP_232907434.1 type IV pilus secretin PilQ family protein -
  LVB77_RS18000 (LVB77_18000) - 3988665..3989213 (-) 549 WP_232907435.1 pilus assembly protein PilP -
  LVB77_RS18005 (LVB77_18005) pilO 3989213..3989929 (-) 717 WP_232907436.1 type 4a pilus biogenesis protein PilO -
  LVB77_RS18010 (LVB77_18010) - 3989926..3990771 (-) 846 WP_232907437.1 PilN domain-containing protein -
  LVB77_RS18015 (LVB77_18015) pilM 3990771..3991829 (-) 1059 WP_232907438.1 pilus assembly protein PilM Machinery gene
  LVB77_RS18020 (LVB77_18020) - 3992060..3994588 (+) 2529 WP_232907439.1 penicillin-binding protein 1A -
  LVB77_RS18025 (LVB77_18025) - 3994753..3995409 (+) 657 WP_232907440.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37710.22 Da        Isoelectric Point: 4.5795

>NTDB_id=639112 LVB77_RS18015 WP_232907438.1 3990771..3991829(-) (pilM) [Lysobacter sp. 5GHs7-4]
MGVITKSQPALVGVDISSTAVKLLQLSRAGNRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIKRAVARSGTRVKFAAAA
VAGSSVITKVIPMPGDLDGEELESQVELEAVNYVPYPIEEVNHDFEVLGPMPNSPDMIQVLLAASRSENVEVRASALEIG
GLTPKVMDVEAFAVENAFALIADHLSTPRDGIVALIDSGATMTTLNVLRNGRSLYSREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPESYSAEVLEPFKEAMVQQVSRLLQFFYAGSEFNRVDQIVLAGGCASIPGIAEMVEEQLGVPTIIANPLA
HMTLGPRVQAHALAQDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=639112 LVB77_RS18015 WP_232907438.1 3990771..3991829(-) (pilM) [Lysobacter sp. 5GHs7-4]
GTGGGCGTCATCACAAAAAGCCAGCCGGCCCTCGTCGGCGTGGATATCAGTTCGACCGCAGTGAAGCTGTTGCAGCTCTC
CCGAGCCGGCAACCGCTACCGCGTCGAGCATTACGCCGTCGAGCCGCTACCGCCGAACGCCGTCGTCGAGAAGAACATCG
TCGAGGTCGAGGCCGTGGGCGAGGCGATCAAGCGCGCGGTCGCTAGGTCCGGAACCCGGGTCAAGTTCGCCGCCGCGGCC
GTCGCCGGGTCCTCGGTGATCACCAAGGTGATCCCGATGCCGGGCGACCTGGACGGCGAGGAACTCGAGTCGCAGGTCGA
ATTGGAGGCGGTGAACTACGTGCCGTATCCGATCGAGGAAGTAAATCACGACTTCGAGGTGCTGGGACCGATGCCCAACA
GCCCGGACATGATCCAGGTGCTGCTGGCCGCGTCGCGCTCAGAGAACGTCGAAGTCCGCGCCTCGGCGCTGGAGATCGGC
GGCCTGACCCCCAAGGTCATGGACGTCGAGGCGTTCGCGGTCGAGAACGCGTTCGCGCTGATCGCCGACCATCTCAGCAC
GCCGCGCGACGGCATCGTCGCCCTGATCGACTCGGGCGCGACCATGACCACGCTCAACGTGCTGCGCAACGGCCGCAGCC
TCTACAGCCGCGAGCAGGTCTTCGGCGGCAAGCAGCTCACCGACGAGGTGATGCGGCGCTACGGCCTGAGCTACGAGGAA
GCGGGCCTGGCCAAGCGCCAGGGCGGCTTGCCCGAGAGCTACTCGGCCGAAGTGCTGGAGCCCTTCAAGGAAGCGATGGT
GCAGCAGGTCAGCCGCCTGTTGCAGTTCTTCTACGCCGGTAGCGAGTTCAACCGCGTGGACCAGATCGTGCTCGCCGGCG
GTTGCGCCTCCATCCCCGGCATCGCCGAGATGGTCGAGGAGCAGCTGGGCGTGCCCACCATCATCGCCAACCCGCTGGCG
CACATGACGCTCGGTCCGCGCGTGCAGGCGCACGCGCTAGCGCAGGACGCGCCGGCGTTGATGATCGCGTGCGGCCTCGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.009

98.58

0.503
  comM Acinetobacter nosocomialis M2

51.009

98.58

0.503
  comM Acinetobacter baylyi ADP1

50

98.864

0.494
  pilM Legionella pneumophila strain ERS1305867

46.334

96.875

0.449