Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   W911_RS09640 Genome accession   NC_022997
Coordinates   2070666..2071193 (+) Length   175 a.a.
NCBI ID   WP_023787354.1    Uniprot ID   V5SF15
Organism   Hyphomicrobium nitrativorans NL23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2065666..2076193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  W911_RS09615 (W911_09945) - 2066169..2066768 (+) 600 WP_023787350.1 hypothetical protein -
  W911_RS17385 (W911_09950) - 2066872..2067393 (-) 522 WP_023787351.1 hypothetical protein -
  W911_RS09630 (W911_09955) - 2067647..2068009 (-) 363 WP_023787352.1 YkgJ family cysteine cluster protein -
  W911_RS17390 (W911_09960) - 2068342..2070396 (+) 2055 WP_023787353.1 pentapeptide repeat-containing protein -
  W911_RS09640 (W911_09965) ssb 2070666..2071193 (+) 528 WP_023787354.1 single-stranded DNA-binding protein Machinery gene
  W911_RS09645 (W911_09970) - 2071288..2072193 (-) 906 WP_023787355.1 hypothetical protein -
  W911_RS09650 (W911_09975) - 2072255..2072980 (-) 726 WP_023787356.1 PRC-barrel domain-containing protein -
  W911_RS09655 (W911_09980) gyrA 2073282..2076050 (+) 2769 WP_023787357.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18663.35 Da        Isoelectric Point: 6.9889

>NTDB_id=63890 W911_RS09640 WP_023787354.1 2070666..2071193(+) (ssb) [Hyphomicrobium nitrativorans NL23]
MAGSVNKVILIGNLGRDPEIRRTQDGRPIANLRIATSETWRDKSSGERRERTEWHSVVVFNENLCRVVEQYLKKGAKVYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFNGTLTMLDGRSGGGGGGLSESGQSDYGGDSGGFGDSEPRRSSGGGRSSGGGGS
KGGGGGGSFDDEIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=63890 W911_RS09640 WP_023787354.1 2070666..2071193(+) (ssb) [Hyphomicrobium nitrativorans NL23]
ATGGCCGGATCGGTCAACAAAGTGATCCTGATCGGAAACCTGGGGCGTGACCCCGAGATCCGCCGCACGCAGGACGGGCG
TCCGATCGCCAACCTCCGGATCGCGACCAGCGAAACGTGGCGCGACAAGTCGAGCGGCGAGCGGCGCGAGCGGACGGAAT
GGCATTCCGTCGTGGTGTTCAACGAGAACCTGTGCCGCGTGGTCGAGCAGTACCTCAAGAAGGGCGCGAAGGTTTACATC
GAGGGCCAGTTGCAGACCCGCAAATGGCAGGATCAGCAGGGCCAGGATCGCTACAGCACGGAAGTGGTGCTGCAGGGCTT
TAACGGCACGCTGACGATGCTCGACGGGCGCTCTGGTGGTGGTGGCGGCGGTCTCTCGGAGAGCGGGCAGTCGGATTATG
GCGGCGACAGCGGCGGGTTTGGCGACAGCGAGCCTCGCCGTAGCAGTGGCGGTGGCCGCAGCAGCGGCGGAGGCGGTTCG
AAGGGCGGCGGCGGTGGCGGCTCGTTCGACGACGAGATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5SF15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.136

100

0.514
  ssb Glaesserella parasuis strain SC1401

45.745

100

0.491
  ssb Neisseria meningitidis MC58

36.757

100

0.389
  ssb Neisseria gonorrhoeae MS11

36.216

100

0.383

Multiple sequence alignment