Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LSG25_RS16810 Genome accession   NZ_CP089848
Coordinates   3667582..3668085 (+) Length   167 a.a.
NCBI ID   WP_232742034.1    Uniprot ID   -
Organism   Paralcaligenes sp. KSB-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3662582..3673085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG25_RS16790 (LSG25_16790) catC 3663871..3664146 (-) 276 WP_232742030.1 muconolactone Delta-isomerase -
  LSG25_RS16795 (LSG25_16795) - 3664167..3665156 (-) 990 WP_232742031.1 tripartite tricarboxylate transporter substrate binding protein -
  LSG25_RS16800 (LSG25_16800) - 3665238..3666365 (-) 1128 WP_232742032.1 muconate/chloromuconate family cycloisomerase -
  LSG25_RS16805 (LSG25_16805) - 3666504..3667409 (+) 906 WP_232742033.1 LysR family transcriptional regulator -
  LSG25_RS16810 (LSG25_16810) ssb 3667582..3668085 (+) 504 WP_232742034.1 single-stranded DNA-binding protein Machinery gene
  LSG25_RS16815 (LSG25_16815) - 3668295..3668873 (-) 579 WP_232742035.1 AAA family ATPase -
  LSG25_RS16820 (LSG25_16820) - 3668888..3670537 (-) 1650 WP_232742036.1 MFS transporter -
  LSG25_RS16825 (LSG25_16825) - 3670869..3671678 (+) 810 WP_232742037.1 enoyl-CoA hydratase/isomerase family protein -
  LSG25_RS16830 (LSG25_16830) - 3671756..3672727 (+) 972 WP_232742038.1 tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18126.17 Da        Isoelectric Point: 6.9867

>NTDB_id=638872 LSG25_RS16810 WP_232742034.1 3667582..3668085(+) (ssb) [Paralcaligenes sp. KSB-10]
MASVNKVILVGNLGRDPEVRYSPDGAAICNVSIATTSQWKDKASGEKREETEWHRVVFYNRLAEIAGEYLKKGRSVYVEG
RLKTRKWQDKDTGADRFSTDIVADQMQMLGGREGEGMGAGGGGGFSSSAPQQQQQQQRAPRPAQGARPAAPQAAPANLAD
MDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=638872 LSG25_RS16810 WP_232742034.1 3667582..3668085(+) (ssb) [Paralcaligenes sp. KSB-10]
ATGGCATCGGTCAATAAAGTCATACTCGTAGGCAATCTGGGACGCGATCCCGAAGTCCGCTACAGCCCCGACGGCGCGGC
AATCTGCAATGTATCCATTGCGACCACTTCCCAGTGGAAAGACAAGGCGTCGGGGGAAAAGCGCGAAGAAACCGAGTGGC
ATCGGGTCGTGTTTTACAACCGCCTGGCTGAAATCGCCGGCGAATACCTCAAGAAGGGCCGCTCGGTCTATGTTGAAGGC
CGCCTTAAAACCCGCAAGTGGCAAGACAAGGACACCGGCGCCGACCGCTTCAGTACCGACATCGTCGCCGACCAGATGCA
AATGCTGGGTGGCCGCGAAGGCGAAGGCATGGGGGCGGGCGGTGGTGGTGGCTTCAGCAGCTCGGCTCCGCAACAACAAC
AGCAGCAACAGCGCGCTCCGCGTCCCGCCCAGGGCGCACGCCCCGCCGCGCCGCAGGCCGCTCCGGCCAATCTGGCCGAT
ATGGATGATGATATTCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.778

100

0.569
  ssb Glaesserella parasuis strain SC1401

48.634

100

0.533
  ssb Neisseria gonorrhoeae MS11

50.857

100

0.533
  ssb Neisseria meningitidis MC58

50

100

0.527