Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LUY19_RS09325 Genome accession   NZ_CP089788
Coordinates   1990838..1991443 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Kentucky strain ZTA19/00847     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1985838..1996443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY19_RS09305 - 1986233..1987993 (-) 1761 WP_000156448.1 AAA family ATPase -
  LUY19_RS09310 matP 1988179..1988631 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LUY19_RS09315 ompA 1988703..1989755 (-) 1053 WP_001670727.1 porin OmpA -
  LUY19_RS09320 sulA 1990112..1990621 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  LUY19_RS09325 sxy/tfoX 1990838..1991443 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LUY19_RS09330 yccS 1991430..1993583 (-) 2154 WP_000950881.1 YccS family putative transporter -
  LUY19_RS09335 - 1993602..1994048 (-) 447 WP_001261222.1 YccF domain-containing protein -
  LUY19_RS09340 helD 1994172..1996226 (+) 2055 WP_023228225.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=638650 LUY19_RS09325 WP_001202375.1 1990838..1991443(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Kentucky strain ZTA19/00847]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=638650 LUY19_RS09325 WP_001202375.1 1990838..1991443(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Kentucky strain ZTA19/00847]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751