Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ND436_RS03355 Genome accession   NZ_CP106918
Coordinates   587212..587736 (+) Length   174 a.a.
NCBI ID   WP_003695064.1    Uniprot ID   Q5F7Y0
Organism   Neisseria gonorrhoeae strain 9071     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 582212..592736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ND436_RS03325 (ND436_003325) - 582742..583428 (+) 687 WP_229930550.1 opacity family porin -
  ND436_RS03330 (ND436_003330) - 583442..583615 (+) 174 WP_167550559.1 hypothetical protein -
  ND436_RS03335 (ND436_003335) - 583793..584286 (+) 494 Protein_642 REP-associated tyrosine transposase -
  ND436_RS03340 (ND436_003340) - 584323..584589 (+) 267 Protein_643 transposase -
  ND436_RS03345 (ND436_003345) - 585091..585714 (+) 624 WP_003688215.1 lytic transglycosylase domain-containing protein -
  ND436_RS03350 (ND436_003350) - 585826..587208 (+) 1383 WP_003688217.1 MFS transporter -
  ND436_RS03355 (ND436_003355) ssb 587212..587736 (+) 525 WP_003695064.1 single-stranded DNA-binding protein Machinery gene
  ND436_RS03360 (ND436_003360) - 588109..589032 (+) 924 WP_003699810.1 DMT family transporter -
  ND436_RS03365 (ND436_003365) fumC 589097..590485 (-) 1389 WP_003691001.1 class II fumarate hydratase -
  ND436_RS03370 (ND436_003370) recP/tkt 590629..592608 (-) 1980 WP_003688227.1 transketolase Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19448.66 Da        Isoelectric Point: 5.8313

>NTDB_id=638546 ND436_RS03355 WP_003695064.1 587212..587736(+) (ssb) [Neisseria gonorrhoeae strain 9071]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYDEGYGQSQEAYQRPAQQSRQPAPDAPSHPQEAPAAPRRQPVP
AAAPVEDIDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=638546 ND436_RS03355 WP_003695064.1 587212..587736(+) (ssb) [Neisseria gonorrhoeae strain 9071]
ATGTCATTGAACAAAGTCATCCTTATCGGCCGCCTCGGACGCGATCCCGAAGTGCGCTATATGCCCAACGGCGAGGCAGT
GTGTAATTTCAGCGTCGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAGCGCGTAGAGCGCACCGAATGGCACAACA
TCACGATGTACCGCAAACTGGCGGAAATTGCCGGGCAATACCTCAAAAAAGGCGGGCTGGTTTATCTGGAAGGCAGAATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAACGCACCGCTTACGATATTGTCGCCAATGAAATGAAAATGTTGGG
CGGGCGCAATGAAAACAGCGGCGGCGCGCCTTACGATGAAGGTTACGGTCAGAGTCAGGAGGCTTACCAACGCCCCGCTC
AGCAAAGCCGGCAGCCCGCTCCCGACGCGCCGTCCCATCCCCAAGAAGCACCCGCCGCGCCGCGCCGCCAACCCGTGCCG
GCCGCCGCCCCGGTCGAGGACATTGACGACGACATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F7Y0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

100

100

1
  ssb Neisseria meningitidis MC58

98.851

100

0.989
  ssb Vibrio cholerae strain A1552

47.778

100

0.494
  ssb Glaesserella parasuis strain SC1401

44.505

100

0.466