Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LU294_RS05895 Genome accession   NZ_CP089743
Coordinates   1132811..1133557 (+) Length   248 a.a.
NCBI ID   WP_000487010.1    Uniprot ID   Q81LT9
Organism   Bacillus paranthracis strain SHOU-BC01     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1127811..1138557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU294_RS05865 (LU294_05865) - 1128100..1130244 (+) 2145 WP_109630173.1 HD family phosphohydrolase -
  LU294_RS05870 (LU294_05870) ybeY 1130241..1130711 (+) 471 WP_046197818.1 rRNA maturation RNase YbeY -
  LU294_RS05875 (LU294_05875) - 1130708..1131061 (+) 354 WP_074543048.1 diacylglycerol kinase family protein -
  LU294_RS05880 (LU294_05880) - 1131161..1131559 (+) 399 WP_001014347.1 cytidine deaminase -
  LU294_RS05885 (LU294_05885) era 1131552..1132457 (+) 906 WP_001080241.1 GTPase Era -
  LU294_RS05890 (LU294_05890) - 1132634..1132777 (+) 144 WP_000883924.1 YqzL family protein -
  LU294_RS05895 (LU294_05895) recO 1132811..1133557 (+) 747 WP_000487010.1 DNA repair protein RecO Machinery gene
  LU294_RS05900 (LU294_05900) - 1133665..1134297 (+) 633 WP_000583759.1 helix-turn-helix transcriptional regulator -
  LU294_RS05905 (LU294_05905) - 1134327..1135139 (+) 813 WP_000368943.1 pyruvate, water dikinase regulatory protein -
  LU294_RS05910 (LU294_05910) dnaG 1135991..1137787 (+) 1797 WP_000528216.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28665.22 Da        Isoelectric Point: 8.0540

>NTDB_id=638434 LU294_RS05895 WP_000487010.1 1132811..1133557(+) (recO) [Bacillus paranthracis strain SHOU-BC01]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=638434 LU294_RS05895 WP_000487010.1 1132811..1133557(+) (recO) [Bacillus paranthracis strain SHOU-BC01]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGCCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAAATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGAATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTAGGGAGGGCGGTTTTCTGTGCTCACGTCATGCTGAGCAAGATCAGTATCGTATACCAGTGGG
GGAAGCCGTTCATAAATTATTACGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81LT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552