Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   LUM42_RS05580 Genome accession   NZ_CP089603
Coordinates   1198311..1198904 (+) Length   197 a.a.
NCBI ID   WP_038151289.1    Uniprot ID   A0A0Q2XYP7
Organism   Vibrio furnissii strain VFN3     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1193311..1203904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUM42_RS05560 (LUM42_05560) panP 1193655..1195298 (-) 1644 WP_206981462.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  LUM42_RS05565 (LUM42_05565) - 1195437..1195949 (-) 513 WP_055466373.1 hypothetical protein -
  LUM42_RS05570 (LUM42_05570) - 1196093..1196998 (-) 906 WP_143679187.1 lysine exporter LysO family protein -
  LUM42_RS05575 (LUM42_05575) - 1197018..1197938 (-) 921 WP_004726364.1 HDOD domain-containing protein -
  LUM42_RS05580 (LUM42_05580) tfoX 1198311..1198904 (+) 594 WP_038151289.1 TfoX/Sxy family DNA transformation protein Regulator
  LUM42_RS05585 (LUM42_05585) - 1199036..1199584 (-) 549 WP_004726362.1 hypothetical protein -
  LUM42_RS05590 (LUM42_05590) - 1199809..1200306 (-) 498 WP_004726361.1 response regulator -
  LUM42_RS05595 (LUM42_05595) - 1200316..1202259 (-) 1944 WP_232658610.1 ATP-binding protein -
  LUM42_RS05600 (LUM42_05600) - 1202492..1203763 (+) 1272 WP_004726359.1 DUF945 family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23223.76 Da        Isoelectric Point: 8.1208

>NTDB_id=638354 LUM42_RS05580 WP_038151289.1 1198311..1198904(+) (tfoX) [Vibrio furnissii strain VFN3]
MDMCEHRFFDYAIKFGAYQKRSMFGGIGLFQQEAMYALLTDDCIFIRGGEDLDKILTDLGCEKYRHVKKQTTATVNYYDI
TQLFEQNYSDLDSIIERAILYSIEQRYFQKSHANRRLRDLPNMQLTLERMVKKAGVEDVDTFMRLGAPEVFNKVRRIYGS
DLDVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCHAR

Nucleotide


Download         Length: 594 bp        

>NTDB_id=638354 LUM42_RS05580 WP_038151289.1 1198311..1198904(+) (tfoX) [Vibrio furnissii strain VFN3]
ATGGATATGTGTGAGCATAGATTTTTCGATTATGCAATTAAGTTTGGTGCCTACCAAAAACGCTCTATGTTTGGTGGTAT
TGGTTTGTTTCAACAAGAGGCGATGTATGCCTTGCTAACCGATGACTGCATCTTTATTCGGGGTGGTGAAGACCTCGATA
AAATTTTGACGGATCTGGGGTGTGAGAAATATCGCCATGTGAAGAAGCAAACAACCGCAACGGTTAACTATTACGATATT
ACACAGCTATTTGAACAAAATTATTCGGATTTAGATTCAATTATCGAACGCGCTATCTTGTATTCGATTGAACAACGGTA
CTTTCAGAAATCGCATGCGAATCGCCGGCTGAGGGATTTGCCTAATATGCAGTTAACGCTGGAACGTATGGTGAAGAAGG
CGGGCGTTGAAGACGTGGACACTTTCATGCGTTTAGGTGCGCCGGAAGTGTTCAATAAAGTTCGTCGTATTTACGGTAGT
GATTTGGATGTGAAATTGCTGTGGAAATTCGCGGGTGCGATTGAAGGAATCCATTGGAAACTGCTGCAAGAGCCGCGCAA
GCGTCAATTGTTAGAAAGCTGTCACGCGCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(14-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2XYP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

78.462

98.985

0.777
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

78.462

98.985

0.777
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

78.462

98.985

0.777
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

78.462

98.985

0.777
  tfoX Vibrio cholerae strain A1552

78.462

98.985

0.777
  tfoX Vibrio campbellii strain DS40M4

66.667

98.985

0.66
  tfoX Vibrio parahaemolyticus RIMD 2210633

65.128

98.985

0.645
  tfoX Aliivibrio fischeri ES114

57.732

98.477

0.569