Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NDQ80_RS05515 Genome accession   NZ_CP106821
Coordinates   1060562..1061086 (-) Length   174 a.a.
NCBI ID   WP_003695064.1    Uniprot ID   Q5F7Y0
Organism   Neisseria gonorrhoeae strain 10529     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1055562..1066086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ80_RS05500 (NDQ80_05515) recP/tkt 1055690..1057669 (+) 1980 WP_003688227.1 transketolase Machinery gene
  NDQ80_RS05505 (NDQ80_05520) fumC 1057813..1059201 (+) 1389 WP_003691001.1 class II fumarate hydratase -
  NDQ80_RS05510 (NDQ80_05525) - 1059266..1060189 (-) 924 WP_003699810.1 DMT family transporter -
  NDQ80_RS05515 (NDQ80_05530) ssb 1060562..1061086 (-) 525 WP_003695064.1 single-stranded DNA-binding protein Machinery gene
  NDQ80_RS05520 (NDQ80_05535) - 1061090..1062472 (-) 1383 WP_003688217.1 MFS transporter -
  NDQ80_RS05525 (NDQ80_05540) - 1062584..1063207 (-) 624 WP_003688215.1 lytic transglycosylase domain-containing protein -
  NDQ80_RS05530 (NDQ80_05545) - 1063709..1063975 (-) 267 Protein_1080 transposase -
  NDQ80_RS05535 (NDQ80_05550) - 1064012..1064505 (-) 494 Protein_1081 REP-associated tyrosine transposase -
  NDQ80_RS05540 (NDQ80_05555) - 1064708..1064857 (-) 150 WP_172587026.1 hypothetical protein -
  NDQ80_RS05545 (NDQ80_05560) - 1064871..1065558 (-) 688 Protein_1083 opacity family porin -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19448.66 Da        Isoelectric Point: 5.8313

>NTDB_id=638273 NDQ80_RS05515 WP_003695064.1 1060562..1061086(-) (ssb) [Neisseria gonorrhoeae strain 10529]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYDEGYGQSQEAYQRPAQQSRQPAPDAPSHPQEAPAAPRRQPVP
AAAPVEDIDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=638273 NDQ80_RS05515 WP_003695064.1 1060562..1061086(-) (ssb) [Neisseria gonorrhoeae strain 10529]
ATGTCATTGAACAAAGTCATCCTTATCGGCCGCCTCGGACGCGATCCCGAAGTGCGCTATATGCCCAACGGCGAGGCAGT
GTGTAATTTCAGCGTCGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAGCGCGTAGAGCGCACCGAATGGCACAACA
TCACGATGTACCGCAAACTGGCGGAAATTGCCGGGCAATACCTCAAAAAAGGCGGGCTGGTTTATCTGGAAGGCAGAATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAACGCACCGCTTACGATATTGTCGCCAATGAAATGAAAATGTTGGG
CGGGCGCAATGAAAACAGCGGCGGCGCGCCTTACGATGAAGGTTACGGTCAGAGTCAGGAGGCTTACCAACGCCCCGCTC
AGCAAAGCCGGCAGCCCGCTCCCGACGCGCCGTCCCATCCCCAAGAAGCACCCGCCGCGCCGCGCCGCCAACCCGTGCCG
GCCGCCGCCCCGGTCGAGGACATTGACGACGACATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F7Y0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

100

100

1
  ssb Neisseria meningitidis MC58

98.851

100

0.989
  ssb Vibrio cholerae strain A1552

47.778

100

0.494
  ssb Glaesserella parasuis strain SC1401

44.505

100

0.466