Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | LUV29_RS22040 | Genome accession | NZ_CP089592 |
| Coordinates | 4203509..4204027 (-) | Length | 172 a.a. |
| NCBI ID | WP_003219228.1 | Uniprot ID | A0A063XE16 |
| Organism | Bacillus subtilis strain Bsi | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 4177737..4204355 | 4203509..4204027 | within | 0 |
Gene organization within MGE regions
Location: 4177737..4204355
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LUV29_RS21870 (LUV29_21870) | yybN | 4177737..4178174 (+) | 438 | WP_009968442.1 | DUF2712 domain-containing protein | - |
| LUV29_RS21875 (LUV29_21875) | yybM | 4178288..4179043 (+) | 756 | WP_003244187.1 | DUF2705 family protein | - |
| LUV29_RS21880 (LUV29_21880) | yybL | 4179033..4179743 (+) | 711 | WP_003243512.1 | WxPxxD family membrane protein | - |
| LUV29_RS21885 (LUV29_21885) | yybK | 4179740..4180495 (+) | 756 | WP_003243304.1 | DUF2705 family protein | - |
| LUV29_RS21890 (LUV29_21890) | yybJ | 4180492..4181148 (+) | 657 | WP_003243153.1 | ATP-binding cassette domain-containing protein | - |
| LUV29_RS21895 (LUV29_21895) | - | 4181300..4181477 (+) | 178 | Protein_4266 | MFS transporter | - |
| LUV29_RS21900 (LUV29_21900) | - | 4181523..4182311 (-) | 789 | WP_003244492.1 | hypothetical protein | - |
| LUV29_RS21905 (LUV29_21905) | yybH | 4182379..4182768 (-) | 390 | WP_003243451.1 | YybH family protein | - |
| LUV29_RS21910 (LUV29_21910) | yybG | 4182914..4183753 (+) | 840 | WP_003244562.1 | pentapeptide repeat-containing protein | - |
| LUV29_RS21915 (LUV29_21915) | yybF | 4183786..4185000 (-) | 1215 | WP_003243239.1 | MFS transporter | - |
| LUV29_RS21920 (LUV29_21920) | yybE | 4185187..4186065 (+) | 879 | WP_003242958.1 | LysR family transcriptional regulator | - |
| LUV29_RS21925 (LUV29_21925) | yybD | 4186079..4186522 (+) | 444 | WP_003226881.1 | GNAT family N-acetyltransferase | - |
| LUV29_RS21930 (LUV29_21930) | yybC | 4186605..4187084 (+) | 480 | WP_003243923.1 | hypothetical protein | - |
| LUV29_RS21935 (LUV29_21935) | - | 4187109..4187251 (-) | 143 | Protein_4274 | LysR family transcriptional regulator | - |
| LUV29_RS21940 (LUV29_21940) | yybB | 4187259..4187921 (-) | 663 | WP_003226877.1 | MBL fold metallo-hydrolase | - |
| LUV29_RS21945 (LUV29_21945) | yybA | 4188068..4188520 (-) | 453 | WP_003226875.1 | MarR family transcriptional regulator | - |
| LUV29_RS21950 (LUV29_21950) | yyaT | 4188640..4189086 (+) | 447 | WP_003243577.1 | GNAT family N-acetyltransferase | - |
| LUV29_RS21955 (LUV29_21955) | yyaS | 4189083..4189688 (+) | 606 | WP_003244154.1 | YczE/YyaS/YitT family protein | - |
| LUV29_RS21960 (LUV29_21960) | satA | 4189783..4190304 (-) | 522 | WP_003242546.1 | streptothricin N-acetyltransferase SatA | - |
| LUV29_RS21965 (LUV29_21965) | yyaQ | 4190715..4191071 (+) | 357 | WP_003244448.1 | MmcQ/YjbR family DNA-binding protein | - |
| LUV29_RS21970 (LUV29_21970) | yyaP | 4191231..4191797 (+) | 567 | WP_003243497.1 | dihydrofolate reductase family protein | - |
| LUV29_RS21975 (LUV29_21975) | - | 4192039..4192198 (+) | 160 | Protein_4282 | DUF255 domain-containing protein | - |
| LUV29_RS21980 (LUV29_21980) | tet(L) | 4192304..4193680 (-) | 1377 | WP_003242953.1 | tetracycline efflux MFS transporter Tet(L) | - |
| LUV29_RS22265 | tetL | 4193714..4193776 (-) | 63 | WP_010886645.1 | tetracycline resistance efflux system leader peptide | - |
| LUV29_RS21985 (LUV29_21985) | yyaO | 4194029..4194268 (+) | 240 | WP_003243894.1 | DUF255 domain-containing protein | - |
| LUV29_RS21990 (LUV29_21990) | yyaN | 4194419..4194835 (+) | 417 | WP_010886646.1 | MerR family transcriptional regulator | - |
| LUV29_RS21995 (LUV29_21995) | yyaM | 4194832..4195749 (+) | 918 | WP_003242776.1 | DMT family transporter | - |
| LUV29_RS22000 (LUV29_22000) | yyaL | 4195821..4197890 (+) | 2070 | WP_009968448.1 | thioredoxin domain-containing protein | - |
| LUV29_RS22005 (LUV29_22005) | yyaK | 4197887..4198786 (-) | 900 | WP_003244361.1 | CPBP family intramembrane glutamic endopeptidase | - |
| LUV29_RS22010 (LUV29_22010) | yyaJ | 4199012..4200367 (+) | 1356 | WP_003243011.1 | MFS transporter | - |
| LUV29_RS22015 (LUV29_22015) | maa | 4200401..4200955 (-) | 555 | WP_003242928.1 | sugar O-acetyltransferase | - |
| LUV29_RS22020 (LUV29_22020) | yyaH | 4200973..4201353 (-) | 381 | WP_003244460.1 | VOC family protein | - |
| LUV29_RS22025 (LUV29_22025) | ccpB | 4201409..4202344 (-) | 936 | WP_003243573.1 | transcriptional regulator CcpB | - |
| LUV29_RS22030 (LUV29_22030) | xth | 4202403..4203161 (-) | 759 | WP_003243194.1 | exodeoxyribonuclease III | - |
| LUV29_RS22035 (LUV29_22035) | rpsR | 4203226..4203465 (-) | 240 | WP_003219224.1 | 30S ribosomal protein S18 | - |
| LUV29_RS22040 (LUV29_22040) | ssbA | 4203509..4204027 (-) | 519 | WP_003219228.1 | single-stranded DNA-binding protein SsbA | Machinery gene |
| LUV29_RS22045 (LUV29_22045) | rpsF | 4204068..4204355 (-) | 288 | WP_003244064.1 | 30S ribosomal protein S6 | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18742.31 Da Isoelectric Point: 4.7621
>NTDB_id=638261 LUV29_RS22040 WP_003219228.1 4203509..4204027(-) (ssbA) [Bacillus subtilis strain Bsi]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=638261 LUV29_RS22040 WP_003219228.1 4203509..4204027(-) (ssbA) [Bacillus subtilis strain Bsi]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.192 |
100 |
0.599 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
64.151 |
61.628 |
0.395 |
| ssb | Glaesserella parasuis strain SC1401 |
35.519 |
100 |
0.378 |