Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCL41_RS02920 Genome accession   NZ_CP106815
Coordinates   546680..547204 (+) Length   174 a.a.
NCBI ID   WP_003695064.1    Uniprot ID   Q5F7Y0
Organism   Neisseria gonorrhoeae strain 10562     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 541680..552204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL41_RS02890 (OCL41_02890) - 542213..542896 (+) 684 WP_229931476.1 opacity family porin -
  OCL41_RS02895 (OCL41_02895) - 542910..543083 (+) 174 WP_167550559.1 hypothetical protein -
  OCL41_RS02900 (OCL41_02900) - 543261..543754 (+) 494 Protein_569 REP-associated tyrosine transposase -
  OCL41_RS02905 (OCL41_02905) - 543791..544057 (+) 267 Protein_570 transposase -
  OCL41_RS02910 (OCL41_02910) - 544559..545182 (+) 624 WP_003688215.1 lytic transglycosylase domain-containing protein -
  OCL41_RS02915 (OCL41_02915) - 545294..546676 (+) 1383 WP_003688217.1 MFS transporter -
  OCL41_RS02920 (OCL41_02920) ssb 546680..547204 (+) 525 WP_003695064.1 single-stranded DNA-binding protein Machinery gene
  OCL41_RS02925 (OCL41_02925) - 547577..548500 (+) 924 WP_003699810.1 DMT family transporter -
  OCL41_RS02930 (OCL41_02930) fumC 548565..549953 (-) 1389 WP_003691001.1 class II fumarate hydratase -
  OCL41_RS02935 (OCL41_02935) recP/tkt 550097..552076 (-) 1980 WP_003688227.1 transketolase Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19448.66 Da        Isoelectric Point: 5.8313

>NTDB_id=638047 OCL41_RS02920 WP_003695064.1 546680..547204(+) (ssb) [Neisseria gonorrhoeae strain 10562]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYDEGYGQSQEAYQRPAQQSRQPAPDAPSHPQEAPAAPRRQPVP
AAAPVEDIDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=638047 OCL41_RS02920 WP_003695064.1 546680..547204(+) (ssb) [Neisseria gonorrhoeae strain 10562]
ATGTCATTGAACAAAGTCATCCTTATCGGCCGCCTCGGACGCGATCCCGAAGTGCGCTATATGCCCAACGGCGAGGCAGT
GTGTAATTTCAGCGTCGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAGCGCGTAGAGCGCACCGAATGGCACAACA
TCACGATGTACCGCAAACTGGCGGAAATTGCCGGGCAATACCTCAAAAAAGGCGGGCTGGTTTATCTGGAAGGCAGAATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAACGCACCGCTTACGATATTGTCGCCAATGAAATGAAAATGTTGGG
CGGGCGCAATGAAAACAGCGGCGGCGCGCCTTACGATGAAGGTTACGGTCAGAGTCAGGAGGCTTACCAACGCCCCGCTC
AGCAAAGCCGGCAGCCCGCTCCCGACGCGCCGTCCCATCCCCAAGAAGCACCCGCCGCGCCGCGCCGCCAACCCGTGCCG
GCCGCCGCCCCGGTCGAGGACATTGACGACGACATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F7Y0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

100

100

1
  ssb Neisseria meningitidis MC58

98.851

100

0.989
  ssb Vibrio cholerae strain A1552

47.778

100

0.494
  ssb Glaesserella parasuis strain SC1401

44.505

100

0.466