Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LUS72_RS27125 Genome accession   NZ_CP089518
Coordinates   5213179..5213700 (-) Length   173 a.a.
NCBI ID   WP_000981963.1    Uniprot ID   -
Organism   Bacillus cereus strain PT1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5208179..5218700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUS72_RS27105 rplI 5209371..5209817 (-) 447 WP_000864222.1 50S ribosomal protein L9 -
  LUS72_RS27110 - 5209814..5211787 (-) 1974 WP_264448493.1 DHH family phosphoesterase -
  LUS72_RS27115 - 5211889..5212821 (-) 933 WP_141533477.1 YybS family protein -
  LUS72_RS27120 rpsR 5212901..5213134 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  LUS72_RS27125 ssbA 5213179..5213700 (-) 522 WP_000981963.1 single-stranded DNA-binding protein Machinery gene
  LUS72_RS27130 rpsF 5213727..5214017 (-) 291 WP_001233782.1 30S ribosomal protein S6 -
  LUS72_RS27135 ychF 5214209..5215309 (-) 1101 WP_000524664.1 redox-regulated ATPase YchF -
  LUS72_RS27140 - 5215425..5215622 (-) 198 WP_000436055.1 DUF951 domain-containing protein -
  LUS72_RS27145 - 5215643..5216500 (-) 858 WP_071744219.1 mechanosensitive ion channel family protein -
  LUS72_RS27150 yyaC 5216761..5217357 (+) 597 WP_264448494.1 spore protease YyaC -
  LUS72_RS27155 spo0J 5217378..5218229 (-) 852 WP_097831353.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18809.58 Da        Isoelectric Point: 4.9222

>NTDB_id=637909 LUS72_RS27125 WP_000981963.1 5213179..5213700(-) (ssbA) [Bacillus cereus strain PT1]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=637909 LUS72_RS27125 WP_000981963.1 5213179..5213700(-) (ssbA) [Bacillus cereus strain PT1]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGACGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAGAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCGAATGTT
GGTCAACCGATTGACATTTCGGACGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382