Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LUY93_RS07095 Genome accession   NZ_CP089500
Coordinates   1419763..1420449 (-) Length   228 a.a.
NCBI ID   WP_001792568.1    Uniprot ID   A0A133PXY3
Organism   Staphylococcus aureus strain 3144_IIV_ST8     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1414763..1425449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY93_RS07075 rpsT 1415677..1415928 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  LUY93_RS07080 holA 1415973..1416947 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  LUY93_RS07085 comEC 1417004..1419205 (-) 2202 WP_001807336.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LUY93_RS07090 - 1419210..1419671 (-) 462 WP_000439693.1 ComE operon protein 2 -
  LUY93_RS07095 comEA 1419763..1420449 (-) 687 WP_001792568.1 ComEA family DNA-binding protein Machinery gene
  LUY93_RS07100 - 1420489..1421205 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  LUY93_RS07105 rsfS 1421208..1421561 (-) 354 WP_001088022.1 ribosome silencing factor -
  LUY93_RS07110 yqeK 1421562..1422146 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LUY93_RS07115 nadD 1422136..1422705 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  LUY93_RS07120 yhbY 1422708..1422998 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  LUY93_RS07125 aroE 1423002..1423808 (-) 807 WP_000666761.1 shikimate dehydrogenase -
  LUY93_RS07130 yqeH 1423822..1424922 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=637652 LUY93_RS07095 WP_001792568.1 1419763..1420449(-) (comEA) [Staphylococcus aureus strain 3144_IIV_ST8]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=637652 LUY93_RS07095 WP_001792568.1 1419763..1420449(-) (comEA) [Staphylococcus aureus strain 3144_IIV_ST8]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969