Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | LUZ00_RS01770 | Genome accession | NZ_CP089498 |
| Coordinates | 393241..393744 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain M03/0073_III_ST239 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 393241..414915 | 393241..393744 | within | 0 |
Gene organization within MGE regions
Location: 393241..414915
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LUZ00_RS01770 | ssbA | 393241..393744 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| LUZ00_RS01775 | rpsR | 393796..394038 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| LUZ00_RS01780 | - | 394267..395064 (-) | 798 | WP_000119675.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| LUZ00_RS01785 | - | 395088..396302 (-) | 1215 | WP_015977853.1 | site-specific integrase | - |
| LUZ00_RS01790 | - | 396463..397086 (-) | 624 | WP_000230361.1 | helix-turn-helix transcriptional regulator | - |
| LUZ00_RS01795 | - | 397235..397399 (+) | 165 | WP_001611932.1 | helix-turn-helix domain-containing protein | - |
| LUZ00_RS01800 | - | 397400..397672 (+) | 273 | WP_001138305.1 | helix-turn-helix domain-containing protein | - |
| LUZ00_RS01805 | - | 397684..397857 (+) | 174 | WP_000784892.1 | hypothetical protein | - |
| LUZ00_RS01810 | - | 397824..398027 (+) | 204 | WP_001231376.1 | hypothetical protein | - |
| LUZ00_RS01815 | - | 398029..398412 (+) | 384 | WP_031788845.1 | hypothetical protein | - |
| LUZ00_RS01820 | tscT | 398413..398739 (+) | 327 | WP_061731591.1 | type II toxin-antitoxin system toxin TscT | - |
| LUZ00_RS01825 | - | 398803..399672 (+) | 870 | WP_061642140.1 | primase alpha helix C-terminal domain-containing protein | - |
| LUZ00_RS01830 | - | 399689..401146 (+) | 1458 | WP_000390455.1 | virulence-associated E family protein | - |
| LUZ00_RS01835 | - | 401447..401809 (+) | 363 | WP_001039168.1 | hypothetical protein | - |
| LUZ00_RS01840 | - | 401811..402095 (+) | 285 | WP_000998181.1 | hypothetical protein | - |
| LUZ00_RS01845 | - | 402092..402733 (+) | 642 | WP_061732984.1 | pathogenicity island protein | - |
| LUZ00_RS01850 | - | 403269..403610 (+) | 342 | WP_001190614.1 | hypothetical protein | - |
| LUZ00_RS01855 | - | 403641..404294 (+) | 654 | WP_048667708.1 | hypothetical protein | - |
| LUZ00_RS01860 | - | 404347..404874 (+) | 528 | WP_048667706.1 | spore coat protein | - |
| LUZ00_RS01865 | - | 405006..405218 (+) | 213 | WP_025174984.1 | hypothetical protein | - |
| LUZ00_RS01870 | - | 405215..405784 (+) | 570 | WP_001281787.1 | terminase small subunit | - |
| LUZ00_RS01875 | - | 406213..406731 (+) | 519 | WP_000624990.1 | hypothetical protein | - |
| LUZ00_RS01880 | - | 406728..407156 (+) | 429 | WP_000591858.1 | hypothetical protein | - |
| LUZ00_RS01885 | - | 407143..407922 (+) | 780 | WP_000705255.1 | hypothetical protein | - |
| LUZ00_RS01890 | - | 408268..408549 (+) | 282 | WP_001577971.1 | hypothetical protein | - |
| LUZ00_RS01895 | - | 408667..409179 (+) | 513 | WP_000813311.1 | hypothetical protein | - |
| LUZ00_RS01900 | - | 409195..409374 (+) | 180 | WP_000797954.1 | hypothetical protein | - |
| LUZ00_RS01905 | - | 409978..410916 (-) | 939 | WP_001822249.1 | Abi family protein | - |
| LUZ00_RS01910 | - | 410955..411656 (-) | 702 | Protein_379 | tyrosine-type recombinase/integrase | - |
| LUZ00_RS01915 | selX | 411862..412473 (+) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| LUZ00_RS01920 | - | 412842..413210 (+) | 369 | WP_000849177.1 | YxeA family protein | - |
| LUZ00_RS01925 | - | 413391..413963 (+) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| LUZ00_RS01930 | - | 414101..414364 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| LUZ00_RS01935 | - | 414664..414915 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=637591 LUZ00_RS01770 WP_000934799.1 393241..393744(+) (ssbA) [Staphylococcus aureus strain M03/0073_III_ST239]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=637591 LUZ00_RS01770 WP_000934799.1 393241..393744(+) (ssbA) [Staphylococcus aureus strain M03/0073_III_ST239]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |