Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LUY98_RS08585 Genome accession   NZ_CP089497
Coordinates   1697901..1698404 (-) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain 3045_IIV_ST8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1676722..1699156 1697901..1698404 within 0


Gene organization within MGE regions


Location: 1676722..1699156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY98_RS08420 - 1676722..1676973 (-) 252 WP_000466741.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  LUY98_RS08425 - 1677265..1677528 (+) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -
  LUY98_RS08430 - 1677666..1678238 (-) 573 WP_000769722.1 PepSY domain-containing protein -
  LUY98_RS08435 - 1678419..1678787 (-) 369 WP_000849162.1 YxeA family protein -
  LUY98_RS08440 - 1679153..1679770 (-) 618 WP_029549319.1 exotoxin beta-grasp domain-containing protein -
  LUY98_RS08445 - 1679968..1680682 (+) 715 Protein_1622 tyrosine-type recombinase/integrase -
  LUY98_RS08450 - 1680688..1681695 (+) 1008 Protein_1623 Abi family protein -
  LUY98_RS08455 - 1682271..1682450 (-) 180 WP_000797954.1 hypothetical protein -
  LUY98_RS08460 - 1682466..1682978 (-) 513 WP_000813311.1 hypothetical protein -
  LUY98_RS08465 - 1683096..1683377 (-) 282 WP_001577971.1 hypothetical protein -
  LUY98_RS08470 - 1683723..1684502 (-) 780 WP_000705255.1 hypothetical protein -
  LUY98_RS08475 - 1684489..1684917 (-) 429 WP_000591858.1 hypothetical protein -
  LUY98_RS08480 - 1684914..1685432 (-) 519 WP_000624990.1 hypothetical protein -
  LUY98_RS08485 - 1685861..1686430 (-) 570 WP_001281787.1 terminase small subunit -
  LUY98_RS08490 - 1686427..1686639 (-) 213 WP_025174984.1 hypothetical protein -
  LUY98_RS08495 - 1686771..1687298 (-) 528 WP_048667706.1 spore coat protein -
  LUY98_RS08500 - 1687351..1688004 (-) 654 WP_000214170.1 hypothetical protein -
  LUY98_RS08505 - 1688035..1688376 (-) 342 WP_001190614.1 hypothetical protein -
  LUY98_RS08510 - 1688912..1689553 (-) 642 WP_061732984.1 pathogenicity island protein -
  LUY98_RS08515 - 1689550..1689834 (-) 285 WP_000998181.1 hypothetical protein -
  LUY98_RS08520 - 1689836..1690198 (-) 363 WP_001039168.1 hypothetical protein -
  LUY98_RS08525 - 1690499..1691956 (-) 1458 WP_000390455.1 virulence-associated E family protein -
  LUY98_RS08530 - 1691973..1692842 (-) 870 WP_407536042.1 primase alpha helix C-terminal domain-containing protein -
  LUY98_RS08535 tscT 1692906..1693232 (-) 327 WP_061731591.1 type II toxin-antitoxin system toxin TscT -
  LUY98_RS08540 - 1693233..1693616 (-) 384 WP_031788845.1 hypothetical protein -
  LUY98_RS08545 - 1693618..1693821 (-) 204 WP_001231376.1 hypothetical protein -
  LUY98_RS08550 - 1693788..1693961 (-) 174 WP_000784892.1 hypothetical protein -
  LUY98_RS08555 - 1693973..1694245 (-) 273 WP_001138305.1 helix-turn-helix domain-containing protein -
  LUY98_RS08560 - 1694246..1694410 (-) 165 WP_001611932.1 helix-turn-helix domain-containing protein -
  LUY98_RS08565 - 1694559..1695182 (+) 624 WP_000230361.1 helix-turn-helix transcriptional regulator -
  LUY98_RS08570 - 1695343..1696557 (+) 1215 WP_015977853.1 site-specific integrase -
  LUY98_RS08575 - 1696581..1697378 (+) 798 WP_000119675.1 type II toxin-antitoxin system PemK/MazF family toxin -
  LUY98_RS08580 rpsR 1697607..1697849 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  LUY98_RS08585 ssbA 1697901..1698404 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  LUY98_RS08590 rpsF 1698425..1698721 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  LUY98_RS08595 - 1698965..1699156 (+) 192 WP_001052483.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=637575 LUY98_RS08585 WP_000934799.1 1697901..1698404(-) (ssbA) [Staphylococcus aureus strain 3045_IIV_ST8]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=637575 LUY98_RS08585 WP_000934799.1 1697901..1698404(-) (ssbA) [Staphylococcus aureus strain 3045_IIV_ST8]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATC
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365