Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   LUY98_RS02380 Genome accession   NZ_CP089497
Coordinates   443104..443601 (+) Length   165 a.a.
NCBI ID   WP_001796472.1    Uniprot ID   A0A5F0HJ55
Organism   Staphylococcus aureus strain 3045_IIV_ST8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 438104..448601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY98_RS02340 - 438148..439134 (+) 987 WP_000161307.1 ROK family glucokinase -
  LUY98_RS02345 - 439134..439463 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LUY98_RS02350 - 439460..440083 (+) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  LUY98_RS02355 comGA 440135..441109 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  LUY98_RS02360 comGB 441081..442151 (+) 1071 WP_061843397.1 competence type IV pilus assembly protein ComGB Machinery gene
  LUY98_RS02365 comGC 442165..442476 (+) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  LUY98_RS02370 comGD 442454..442900 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  LUY98_RS02375 comGE 442887..443186 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  LUY98_RS02380 comGF 443104..443601 (+) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  LUY98_RS02385 - 443698..443844 (+) 147 WP_001789879.1 hypothetical protein -
  LUY98_RS02390 - 443834..444358 (+) 525 WP_001015120.1 shikimate kinase -
  LUY98_RS02395 gcvT 444517..445608 (+) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  LUY98_RS02400 gcvPA 445628..446974 (+) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  LUY98_RS02405 gcvPB 446967..448439 (+) 1473 WP_000202176.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19169.89 Da        Isoelectric Point: 10.1358

>NTDB_id=637560 LUY98_RS02380 WP_001796472.1 443104..443601(+) (comGF) [Staphylococcus aureus strain 3045_IIV_ST8]
MILSKVTNKYVPFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDKNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNLQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=637560 LUY98_RS02380 WP_001796472.1 443104..443601(+) (comGF) [Staphylococcus aureus strain 3045_IIV_ST8]
ATGATATTAAGCAAAGTGACCAACAAATATGTGCCATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAAAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
AAAACAATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(68-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5F0HJ55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

98.182

100

0.982
  comGF Staphylococcus aureus MW2

95.758

100

0.958