Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LUY98_RS02370 Genome accession   NZ_CP089497
Coordinates   442454..442900 (+) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 3045_IIV_ST8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 437454..447900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY98_RS02335 - 437948..438151 (+) 204 WP_000087561.1 YqgQ family protein -
  LUY98_RS02340 - 438148..439134 (+) 987 WP_000161307.1 ROK family glucokinase -
  LUY98_RS02345 - 439134..439463 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LUY98_RS02350 - 439460..440083 (+) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  LUY98_RS02355 comGA 440135..441109 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  LUY98_RS02360 comGB 441081..442151 (+) 1071 WP_061843397.1 competence type IV pilus assembly protein ComGB Machinery gene
  LUY98_RS02365 comGC 442165..442476 (+) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  LUY98_RS02370 comGD 442454..442900 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  LUY98_RS02375 comGE 442887..443186 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  LUY98_RS02380 comGF 443104..443601 (+) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  LUY98_RS02385 - 443698..443844 (+) 147 WP_001789879.1 hypothetical protein -
  LUY98_RS02390 - 443834..444358 (+) 525 WP_001015120.1 shikimate kinase -
  LUY98_RS02395 gcvT 444517..445608 (+) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  LUY98_RS02400 gcvPA 445628..446974 (+) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=637558 LUY98_RS02370 WP_001796473.1 442454..442900(+) (comGD) [Staphylococcus aureus strain 3045_IIV_ST8]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=637558 LUY98_RS02370 WP_001796473.1 442454..442900(+) (comGD) [Staphylococcus aureus strain 3045_IIV_ST8]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
CATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993