Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   LUY98_RS02355 Genome accession   NZ_CP089497
Coordinates   440135..441109 (+) Length   324 a.a.
NCBI ID   WP_000697220.1    Uniprot ID   W8U5L8
Organism   Staphylococcus aureus strain 3045_IIV_ST8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 435135..446109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY98_RS02320 rpmG 435595..435744 (+) 150 WP_001265709.1 50S ribosomal protein L33 -
  LUY98_RS02325 - 435953..436492 (+) 540 WP_000164546.1 5-formyltetrahydrofolate cyclo-ligase -
  LUY98_RS02330 - 436504..437967 (+) 1464 WP_001017870.1 rhomboid family intramembrane serine protease -
  LUY98_RS02335 - 437948..438151 (+) 204 WP_000087561.1 YqgQ family protein -
  LUY98_RS02340 - 438148..439134 (+) 987 WP_000161307.1 ROK family glucokinase -
  LUY98_RS02345 - 439134..439463 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LUY98_RS02350 - 439460..440083 (+) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  LUY98_RS02355 comGA 440135..441109 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  LUY98_RS02360 comGB 441081..442151 (+) 1071 WP_061843397.1 competence type IV pilus assembly protein ComGB Machinery gene
  LUY98_RS02365 comGC 442165..442476 (+) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  LUY98_RS02370 comGD 442454..442900 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  LUY98_RS02375 comGE 442887..443186 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  LUY98_RS02380 comGF 443104..443601 (+) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  LUY98_RS02385 - 443698..443844 (+) 147 WP_001789879.1 hypothetical protein -
  LUY98_RS02390 - 443834..444358 (+) 525 WP_001015120.1 shikimate kinase -
  LUY98_RS02395 gcvT 444517..445608 (+) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36897.96 Da        Isoelectric Point: 8.8516

>NTDB_id=637555 LUY98_RS02355 WP_000697220.1 440135..441109(+) (comGA) [Staphylococcus aureus strain 3045_IIV_ST8]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=637555 LUY98_RS02355 WP_000697220.1 440135..441109(+) (comGA) [Staphylococcus aureus strain 3045_IIV_ST8]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGACTTGATGTATCTACACAACAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTGATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGACCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATTGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W8U5L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

100

100

1
  comGA Staphylococcus aureus N315

100

100

1