Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LUY91_RS15065 Genome accession   NZ_CP089495
Coordinates   2976624..2977094 (+) Length   156 a.a.
NCBI ID   WP_000934770.1    Uniprot ID   -
Organism   Staphylococcus aureus strain E1202_II_ST496     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2965502..2982793 2976624..2977094 within 0


Gene organization within MGE regions


Location: 2965502..2982793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY91_RS14965 - 2965502..2966539 (-) 1038 WP_000857198.1 site-specific integrase -
  LUY91_RS14970 - 2966712..2967251 (-) 540 WP_000391618.1 type II toxin-antitoxin system PemK/MazF family toxin -
  LUY91_RS14975 - 2967391..2967558 (-) 168 WP_000705238.1 hypothetical protein -
  LUY91_RS14980 - 2967758..2967943 (-) 186 WP_001089804.1 hypothetical protein -
  LUY91_RS14985 - 2967930..2968085 (-) 156 WP_001049399.1 hypothetical protein -
  LUY91_RS14990 - 2968097..2968804 (-) 708 WP_000094093.1 XRE family transcriptional regulator -
  LUY91_RS14995 - 2968975..2969280 (+) 306 WP_407535437.1 helix-turn-helix transcriptional regulator -
  LUY91_RS15000 - 2969228..2969488 (+) 261 WP_000435341.1 transcriptional regulator -
  LUY91_RS15005 - 2969512..2970051 (-) 540 WP_000351243.1 hypothetical protein -
  LUY91_RS15010 - 2970108..2970860 (+) 753 WP_001148618.1 phage antirepressor KilAC domain-containing protein -
  LUY91_RS15015 - 2970877..2971071 (+) 195 WP_000388066.1 hypothetical protein -
  LUY91_RS15020 - 2971102..2971242 (+) 141 WP_000939496.1 hypothetical protein -
  LUY91_RS15025 - 2971257..2971889 (-) 633 WP_000275058.1 hypothetical protein -
  LUY91_RS15030 - 2971948..2972268 (+) 321 WP_001120197.1 DUF771 domain-containing protein -
  LUY91_RS15035 - 2972265..2972426 (+) 162 WP_000066020.1 DUF1270 domain-containing protein -
  LUY91_RS15040 - 2972519..2972779 (+) 261 WP_000291489.1 DUF1108 family protein -
  LUY91_RS15045 - 2972788..2973051 (+) 264 WP_001205732.1 hypothetical protein -
  LUY91_RS15050 - 2973060..2975003 (+) 1944 WP_000700565.1 AAA family ATPase -
  LUY91_RS15055 - 2975005..2975925 (+) 921 WP_000138481.1 recombinase RecT -
  LUY91_RS15060 - 2976006..2976623 (+) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  LUY91_RS15065 ssbA 2976624..2977094 (+) 471 WP_000934770.1 single-stranded DNA-binding protein Machinery gene
  LUY91_RS15070 - 2977124..2978008 (+) 885 WP_000148301.1 DnaD domain protein -
  LUY91_RS15075 - 2978015..2978233 (+) 219 WP_000338528.1 hypothetical protein -
  LUY91_RS15080 - 2978242..2978646 (+) 405 WP_000401964.1 RusA family crossover junction endodeoxyribonuclease -
  LUY91_RS15085 - 2978659..2979027 (+) 369 WP_000101274.1 SA1788 family PVL leukocidin-associated protein -
  LUY91_RS15090 - 2979031..2979273 (+) 243 WP_000131366.1 SAV1978 family virulence-associated passenger protein -
  LUY91_RS15095 - 2979338..2979787 (+) 450 WP_000982711.1 YopX family protein -
  LUY91_RS15100 - 2979784..2980293 (+) 510 WP_001105598.1 hypothetical protein -
  LUY91_RS15105 - 2980290..2980700 (+) 411 WP_000197967.1 hypothetical protein -
  LUY91_RS15110 - 2980693..2981229 (+) 537 WP_001066444.1 dUTPase -
  LUY91_RS15115 - 2981266..2981472 (+) 207 WP_000195820.1 DUF1381 domain-containing protein -
  LUY91_RS15120 rinB 2981469..2981618 (+) 150 WP_000595265.1 transcriptional activator RinB -
  LUY91_RS15125 - 2981618..2981818 (+) 201 WP_000265039.1 DUF1514 family protein -
  LUY91_RS15130 - 2981846..2982262 (+) 417 WP_000590126.1 hypothetical protein -
  LUY91_RS15135 - 2982494..2982793 (+) 300 WP_000988336.1 HNH endonuclease -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17713.63 Da        Isoelectric Point: 5.2672

>NTDB_id=637543 LUY91_RS15065 WP_000934770.1 2976624..2977094(+) (ssbA) [Staphylococcus aureus strain E1202_II_ST496]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=637543 LUY91_RS15065 WP_000934770.1 2976624..2977094(+) (ssbA) [Staphylococcus aureus strain E1202_II_ST496]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.367

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365