Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   N8I87_RS21605 Genome accession   NZ_CP106798
Coordinates   4668727..4669410 (+) Length   227 a.a.
NCBI ID   WP_263210887.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS 15-9     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4663727..4674410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I87_RS21585 (N8I87_21585) - 4663893..4664783 (+) 891 WP_263210882.1 alpha/beta hydrolase family protein -
  N8I87_RS21590 (N8I87_21590) - 4665057..4666022 (+) 966 WP_263210883.1 alpha/beta hydrolase family protein -
  N8I87_RS21595 (N8I87_21595) - 4666015..4667244 (+) 1230 WP_263210884.1 acyltransferase family protein -
  N8I87_RS21600 (N8I87_21600) - 4667255..4668730 (+) 1476 WP_263210885.1 sensor histidine kinase -
  N8I87_RS21605 (N8I87_21605) vraR 4668727..4669410 (+) 684 WP_263210887.1 response regulator Regulator
  N8I87_RS21610 (N8I87_21610) - 4669511..4670902 (+) 1392 WP_263210889.1 sensor histidine kinase -
  N8I87_RS21615 (N8I87_21615) vraR 4670899..4671573 (+) 675 WP_263210890.1 response regulator Regulator
  N8I87_RS21620 (N8I87_21620) - 4671618..4672838 (+) 1221 WP_263210891.1 cytochrome P450 -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24636.34 Da        Isoelectric Point: 4.7458

>NTDB_id=637487 N8I87_RS21605 WP_263210887.1 4668727..4669410(+) (vraR) [Streptomyces sp. HUAS 15-9]
MTPVGPDPIRVLIADDQQMVRQGFTVLLNTQPDIDVIGQAVDGRDAIAKVSELTPDVVLMDIRMPEMSGIEATRRITTDD
PAVKVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDGPRRAPLRQRVG
DLTERETEVLALIAQGLSNAEIAERLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPGTR

Nucleotide


Download         Length: 684 bp        

>NTDB_id=637487 N8I87_RS21605 WP_263210887.1 4668727..4669410(+) (vraR) [Streptomyces sp. HUAS 15-9]
ATGACACCCGTCGGTCCGGACCCCATCCGCGTGCTGATCGCCGACGACCAGCAAATGGTCCGCCAGGGCTTCACGGTGCT
GCTCAACACCCAGCCCGACATCGACGTGATCGGGCAGGCGGTGGACGGCAGGGACGCCATCGCCAAGGTGTCCGAACTGA
CCCCGGACGTCGTCCTGATGGACATCCGCATGCCCGAAATGAGCGGTATCGAGGCCACCCGCCGCATCACCACCGACGAC
CCCGCCGTCAAGGTCCTGGTCCTCACCACCTTCGACCTGGACGAGTACGTCTACGAGGCGCTCCGTGCCGGCGCCTCCGG
CTTCCTGCTCAAGGACGCCTCCGCGGACCAACTCGCCGAGGCGGTCAGAGTGGTGGCCGCCGGAGACGCCCTGCTCGCCC
CCGGCATCACTCGCCGTCTGATCGCCGAGTTCTCCCGCCTGGACGGCCCCCGTCGCGCCCCGCTGAGGCAACGCGTCGGC
GACCTGACCGAGCGCGAGACGGAGGTGCTGGCCCTGATCGCCCAGGGCCTGTCGAACGCGGAGATCGCCGAACGGCTGGT
GGTGGCCGAGCAGACCGTGAAGACCCACGTCGGCCGCATCCTGGTGAAACTGGGCCTGCGCGACCGCACTCAGGCGGCGG
TGTTCGCCTACGAGTCGGGCCTGGTCCGCCCCGGTACCCGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(11-123)

Bacterial regulatory proteins, luxR family (GerE)

(162-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.581

94.714

0.432
  degU Bacillus subtilis subsp. subtilis str. 168

42.152

98.238

0.414