Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LUZ06_RS08815 Genome accession   NZ_CP089493
Coordinates   1737678..1738181 (-) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain 0308_IA_ST247     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1716507..1738933 1737678..1738181 within 0


Gene organization within MGE regions


Location: 1716507..1738933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ06_RS08650 - 1716507..1716758 (-) 252 WP_000466748.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  LUZ06_RS08655 - 1717058..1717321 (+) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -
  LUZ06_RS08660 - 1717459..1718031 (-) 573 WP_000769720.1 PepSY domain-containing protein -
  LUZ06_RS08665 - 1718212..1718580 (-) 369 WP_000849177.1 YxeA family protein -
  LUZ06_RS08670 selX 1718949..1719560 (-) 612 WP_000475326.1 staphylococcal enterotoxin-like toxin X -
  LUZ06_RS08675 - 1719766..1720467 (+) 702 Protein_1664 tyrosine-type recombinase/integrase -
  LUZ06_RS08680 - 1720506..1721444 (+) 939 WP_001822249.1 Abi family protein -
  LUZ06_RS08685 - 1722048..1722227 (-) 180 WP_000797954.1 hypothetical protein -
  LUZ06_RS08690 - 1722243..1722755 (-) 513 WP_000813311.1 hypothetical protein -
  LUZ06_RS08695 - 1722873..1723154 (-) 282 WP_001577971.1 hypothetical protein -
  LUZ06_RS08700 - 1723500..1724279 (-) 780 WP_000705255.1 hypothetical protein -
  LUZ06_RS08705 - 1724266..1724664 (-) 399 WP_000453652.1 hypothetical protein -
  LUZ06_RS08710 - 1724691..1725209 (-) 519 WP_000624990.1 hypothetical protein -
  LUZ06_RS08715 - 1725638..1726207 (-) 570 WP_001281787.1 terminase small subunit -
  LUZ06_RS08720 - 1726204..1726416 (-) 213 WP_025174984.1 hypothetical protein -
  LUZ06_RS08725 - 1726548..1727075 (-) 528 WP_048667706.1 spore coat protein -
  LUZ06_RS08730 - 1727128..1727781 (-) 654 WP_048667708.1 hypothetical protein -
  LUZ06_RS08735 - 1727812..1728153 (-) 342 WP_001190614.1 hypothetical protein -
  LUZ06_RS08740 - 1728689..1729330 (-) 642 WP_061732984.1 pathogenicity island protein -
  LUZ06_RS08745 - 1729327..1729611 (-) 285 WP_000998181.1 hypothetical protein -
  LUZ06_RS08750 - 1729613..1729975 (-) 363 WP_001039168.1 hypothetical protein -
  LUZ06_RS08755 - 1730276..1731733 (-) 1458 WP_000390455.1 virulence-associated E family protein -
  LUZ06_RS08760 - 1731750..1732619 (-) 870 WP_061642140.1 primase alpha helix C-terminal domain-containing protein -
  LUZ06_RS08765 tscT 1732683..1733009 (-) 327 WP_061731591.1 type II toxin-antitoxin system toxin TscT -
  LUZ06_RS08770 - 1733010..1733393 (-) 384 WP_031788845.1 hypothetical protein -
  LUZ06_RS08775 - 1733395..1733598 (-) 204 WP_001231376.1 hypothetical protein -
  LUZ06_RS08780 - 1733565..1733738 (-) 174 WP_000784892.1 hypothetical protein -
  LUZ06_RS08785 - 1733750..1734022 (-) 273 WP_001138305.1 helix-turn-helix domain-containing protein -
  LUZ06_RS08790 - 1734023..1734187 (-) 165 WP_001611932.1 helix-turn-helix domain-containing protein -
  LUZ06_RS08795 - 1734336..1734959 (+) 624 WP_000230361.1 helix-turn-helix transcriptional regulator -
  LUZ06_RS08800 - 1735120..1736334 (+) 1215 WP_015977853.1 site-specific integrase -
  LUZ06_RS08805 - 1736370..1737155 (+) 786 WP_001797507.1 type II toxin-antitoxin system PemK/MazF family toxin -
  LUZ06_RS08810 rpsR 1737384..1737626 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  LUZ06_RS08815 ssbA 1737678..1738181 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  LUZ06_RS08820 rpsF 1738202..1738498 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  LUZ06_RS08825 - 1738742..1738933 (+) 192 WP_001052483.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=637487 LUZ06_RS08815 WP_000934799.1 1737678..1738181(-) (ssbA) [Staphylococcus aureus strain 0308_IA_ST247]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=637487 LUZ06_RS08815 WP_000934799.1 1737678..1738181(-) (ssbA) [Staphylococcus aureus strain 0308_IA_ST247]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365