Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | LUZ03_RS08800 | Genome accession | NZ_CP089487 |
| Coordinates | 1723784..1724287 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain 0220_II_ST5 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1703033..1728350 | 1723784..1724287 | within | 0 |
Gene organization within MGE regions
Location: 1703033..1728350
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LUZ03_RS08640 | - | 1703033..1703284 (-) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| LUZ03_RS08645 | - | 1703584..1703847 (+) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| LUZ03_RS08650 | - | 1703985..1704557 (-) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| LUZ03_RS08655 | - | 1704738..1705106 (-) | 369 | WP_000849177.1 | YxeA family protein | - |
| LUZ03_RS08660 | selX | 1705475..1706086 (-) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| LUZ03_RS08665 | - | 1706292..1706993 (+) | 702 | Protein_1666 | tyrosine-type recombinase/integrase | - |
| LUZ03_RS08670 | - | 1707032..1707970 (+) | 939 | WP_001822249.1 | Abi family protein | - |
| LUZ03_RS08675 | - | 1708574..1708753 (-) | 180 | WP_000797954.1 | hypothetical protein | - |
| LUZ03_RS08680 | - | 1708769..1709281 (-) | 513 | WP_000813311.1 | hypothetical protein | - |
| LUZ03_RS08685 | - | 1709399..1709680 (-) | 282 | WP_001577971.1 | hypothetical protein | - |
| LUZ03_RS08690 | - | 1710026..1710805 (-) | 780 | WP_000705255.1 | hypothetical protein | - |
| LUZ03_RS08695 | - | 1710792..1711220 (-) | 429 | WP_000591858.1 | hypothetical protein | - |
| LUZ03_RS08700 | - | 1711217..1711735 (-) | 519 | WP_000624990.1 | hypothetical protein | - |
| LUZ03_RS08705 | - | 1712164..1712733 (-) | 570 | WP_001281787.1 | terminase small subunit | - |
| LUZ03_RS08710 | - | 1712730..1712942 (-) | 213 | WP_025174984.1 | hypothetical protein | - |
| LUZ03_RS08715 | - | 1713074..1713601 (-) | 528 | WP_048667706.1 | spore coat protein | - |
| LUZ03_RS08720 | - | 1713654..1714307 (-) | 654 | WP_061730368.1 | hypothetical protein | - |
| LUZ03_RS08725 | - | 1714338..1714679 (-) | 342 | WP_001190614.1 | hypothetical protein | - |
| LUZ03_RS08730 | - | 1715215..1715856 (-) | 642 | WP_015977857.1 | hypothetical protein | - |
| LUZ03_RS08735 | - | 1715858..1716130 (-) | 273 | WP_001149387.1 | hypothetical protein | - |
| LUZ03_RS08740 | - | 1716117..1716920 (-) | 804 | WP_015977855.1 | bifunctional DNA primase/polymerase | - |
| LUZ03_RS08745 | - | 1717091..1718704 (-) | 1614 | WP_047335135.1 | hypothetical protein | - |
| LUZ03_RS08750 | tscT | 1718779..1719084 (-) | 306 | WP_033863183.1 | type II toxin-antitoxin system toxin TscT | - |
| LUZ03_RS08755 | tscA | 1719087..1719296 (-) | 210 | WP_001058490.1 | type II toxin-antitoxin system antitoxin TscA | - |
| LUZ03_RS08760 | - | 1719289..1719435 (-) | 147 | WP_000784873.1 | hypothetical protein | - |
| LUZ03_RS08765 | - | 1719447..1719719 (-) | 273 | WP_061730367.1 | helix-turn-helix domain-containing protein | - |
| LUZ03_RS08770 | - | 1719650..1719931 (-) | 282 | WP_078168781.1 | helix-turn-helix transcriptional regulator | - |
| LUZ03_RS08775 | - | 1719970..1720170 (-) | 201 | WP_001033058.1 | helix-turn-helix transcriptional regulator | - |
| LUZ03_RS08780 | - | 1720277..1721200 (+) | 924 | WP_050436923.1 | helix-turn-helix domain-containing protein | - |
| LUZ03_RS08785 | - | 1721226..1722440 (+) | 1215 | WP_015977853.1 | site-specific integrase | - |
| LUZ03_RS08790 | - | 1722464..1723261 (+) | 798 | WP_000119675.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| LUZ03_RS08795 | rpsR | 1723490..1723732 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| LUZ03_RS08800 | ssbA | 1723784..1724287 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| LUZ03_RS08805 | rpsF | 1724308..1724604 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| LUZ03_RS08810 | - | 1724848..1725039 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| LUZ03_RS08815 | ychF | 1725125..1726222 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| LUZ03_RS08820 | - | 1726234..1726437 (-) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| LUZ03_RS08825 | - | 1726467..1727348 (-) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| LUZ03_RS08830 | - | 1727505..1728350 (-) | 846 | WP_001550052.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=637357 LUZ03_RS08800 WP_000934799.1 1723784..1724287(-) (ssbA) [Staphylococcus aureus strain 0220_II_ST5]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=637357 LUZ03_RS08800 WP_000934799.1 1723784..1724287(-) (ssbA) [Staphylococcus aureus strain 0220_II_ST5]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |