Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | LUY97_RS09135 | Genome accession | NZ_CP089483 |
| Coordinates | 1776881..1777384 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain 0104_III_ST239 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1755710..1779534 | 1776881..1777384 | within | 0 |
Gene organization within MGE regions
Location: 1755710..1779534
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LUY97_RS08970 | - | 1755710..1755961 (-) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| LUY97_RS08975 | - | 1756261..1756524 (+) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| LUY97_RS08980 | - | 1756662..1757234 (-) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| LUY97_RS08985 | - | 1757415..1757783 (-) | 369 | WP_000849177.1 | YxeA family protein | - |
| LUY97_RS08990 | selX | 1758152..1758763 (-) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| LUY97_RS08995 | - | 1758969..1759670 (+) | 702 | Protein_1732 | tyrosine-type recombinase/integrase | - |
| LUY97_RS09000 | - | 1759709..1760647 (+) | 939 | WP_001822249.1 | Abi family protein | - |
| LUY97_RS09005 | - | 1761251..1761430 (-) | 180 | WP_000797954.1 | hypothetical protein | - |
| LUY97_RS09010 | - | 1761446..1761958 (-) | 513 | WP_000813311.1 | hypothetical protein | - |
| LUY97_RS09015 | - | 1762076..1762357 (-) | 282 | WP_001577971.1 | hypothetical protein | - |
| LUY97_RS09020 | - | 1762703..1763482 (-) | 780 | WP_000705255.1 | hypothetical protein | - |
| LUY97_RS09025 | - | 1763469..1763897 (-) | 429 | WP_000591858.1 | hypothetical protein | - |
| LUY97_RS09030 | - | 1763894..1764412 (-) | 519 | WP_000624990.1 | hypothetical protein | - |
| LUY97_RS09035 | - | 1764841..1765410 (-) | 570 | WP_001281787.1 | terminase small subunit | - |
| LUY97_RS09040 | - | 1765407..1765619 (-) | 213 | WP_025174984.1 | hypothetical protein | - |
| LUY97_RS09045 | - | 1765751..1766278 (-) | 528 | WP_048667706.1 | spore coat protein | - |
| LUY97_RS09050 | - | 1766331..1766984 (-) | 654 | WP_048667708.1 | hypothetical protein | - |
| LUY97_RS09055 | - | 1767015..1767356 (-) | 342 | WP_001190614.1 | hypothetical protein | - |
| LUY97_RS09060 | - | 1767892..1768533 (-) | 642 | WP_061732984.1 | pathogenicity island protein | - |
| LUY97_RS09065 | - | 1768530..1768814 (-) | 285 | WP_000998181.1 | hypothetical protein | - |
| LUY97_RS09070 | - | 1768816..1769178 (-) | 363 | WP_001039168.1 | hypothetical protein | - |
| LUY97_RS09075 | - | 1769479..1770936 (-) | 1458 | WP_000390455.1 | virulence-associated E family protein | - |
| LUY97_RS09080 | - | 1770953..1771822 (-) | 870 | WP_061642140.1 | primase alpha helix C-terminal domain-containing protein | - |
| LUY97_RS09085 | tscT | 1771886..1772212 (-) | 327 | WP_061731591.1 | type II toxin-antitoxin system toxin TscT | - |
| LUY97_RS09090 | - | 1772213..1772596 (-) | 384 | WP_031788845.1 | hypothetical protein | - |
| LUY97_RS09095 | - | 1772598..1772801 (-) | 204 | WP_001231376.1 | hypothetical protein | - |
| LUY97_RS09100 | - | 1772768..1772941 (-) | 174 | WP_000784892.1 | hypothetical protein | - |
| LUY97_RS09105 | - | 1772953..1773225 (-) | 273 | WP_001138305.1 | helix-turn-helix domain-containing protein | - |
| LUY97_RS09110 | - | 1773226..1773390 (-) | 165 | WP_001611932.1 | helix-turn-helix domain-containing protein | - |
| LUY97_RS09115 | - | 1773539..1774162 (+) | 624 | WP_000230361.1 | helix-turn-helix transcriptional regulator | - |
| LUY97_RS09120 | - | 1774323..1775537 (+) | 1215 | WP_015977853.1 | site-specific integrase | - |
| LUY97_RS09125 | - | 1775561..1776358 (+) | 798 | WP_000119675.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| LUY97_RS09130 | rpsR | 1776587..1776829 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| LUY97_RS09135 | ssbA | 1776881..1777384 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| LUY97_RS09140 | rpsF | 1777405..1777701 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| LUY97_RS09145 | - | 1777945..1778136 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| LUY97_RS09150 | ychF | 1778222..1779319 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| LUY97_RS09155 | - | 1779331..1779534 (-) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=637269 LUY97_RS09135 WP_000934799.1 1776881..1777384(-) (ssbA) [Staphylococcus aureus strain 0104_III_ST239]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=637269 LUY97_RS09135 WP_000934799.1 1776881..1777384(-) (ssbA) [Staphylococcus aureus strain 0104_III_ST239]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |