Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LTW57_RS09175 Genome accession   NZ_CP089416
Coordinates   1863950..1864462 (+) Length   170 a.a.
NCBI ID   WP_127898262.1    Uniprot ID   -
Organism   Paracoccus marcusii strain 3501     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1858950..1869462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTW57_RS09150 (LTW57_09130) - 1860532..1860786 (+) 255 WP_173403896.1 hypothetical protein -
  LTW57_RS09155 (LTW57_09135) - 1860786..1861187 (+) 402 WP_339817336.1 MAPEG family protein -
  LTW57_RS09160 (LTW57_09140) lpdA 1861250..1862638 (+) 1389 WP_373944283.1 dihydrolipoyl dehydrogenase -
  LTW57_RS09165 (LTW57_09145) - 1862631..1863152 (+) 522 WP_232303257.1 lytic transglycosylase domain-containing protein -
  LTW57_RS09170 (LTW57_09150) - 1863156..1863776 (-) 621 WP_045999444.1 lytic transglycosylase domain-containing protein -
  LTW57_RS09175 (LTW57_09155) ssb 1863950..1864462 (+) 513 WP_127898262.1 single-stranded DNA-binding protein Machinery gene
  LTW57_RS09180 (LTW57_09160) - 1864690..1865736 (+) 1047 WP_373944286.1 Leu/Phe/Val dehydrogenase -
  LTW57_RS09185 (LTW57_09165) aroB 1865813..1866919 (-) 1107 WP_373944288.1 3-dehydroquinate synthase -
  LTW57_RS09190 (LTW57_09170) - 1866916..1867467 (-) 552 WP_240542382.1 shikimate kinase -
  LTW57_RS09195 (LTW57_09175) - 1867594..1867758 (+) 165 WP_187427360.1 hypothetical protein -
  LTW57_RS09200 (LTW57_09180) - 1867751..1869211 (+) 1461 WP_373944290.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 17825.52 Da        Isoelectric Point: 5.9567

>NTDB_id=636897 LTW57_RS09175 WP_127898262.1 1863950..1864462(+) (ssb) [Paracoccus marcusii strain 3501]
MAGSVNKVILVGNLGRDPEIRSFQNGGKVANLRIATSENWKDRTTGERKERTEWHTVAIFNEGLVGVVERYLKKGSKVYV
EGQLETRKWQDQSGQDRYSTEIVLRGIGGTLTMLDGASGGGGGMGGGGMGGGGRDSGGYDDYNQGGGSSSRGGGGGQGGG
RADYDDEIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=636897 LTW57_RS09175 WP_127898262.1 1863950..1864462(+) (ssb) [Paracoccus marcusii strain 3501]
ATGGCAGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGCCGCGACCCGGAAATCCGCAGCTTTCAGAACGGCGG
CAAGGTCGCGAACCTGCGCATCGCCACCTCCGAGAACTGGAAGGACCGCACCACCGGAGAGCGCAAGGAGCGTACCGAGT
GGCACACCGTCGCCATCTTCAACGAGGGCCTGGTGGGCGTCGTCGAACGCTATCTGAAGAAGGGCAGCAAGGTCTATGTC
GAGGGCCAGCTGGAAACCCGCAAGTGGCAGGACCAGTCCGGCCAGGACCGCTACTCGACCGAGATCGTCCTGCGCGGCAT
CGGCGGCACGCTGACCATGCTGGACGGCGCCAGCGGCGGTGGCGGCGGCATGGGTGGTGGCGGCATGGGCGGCGGTGGTC
GCGACAGCGGCGGCTATGACGACTATAACCAGGGCGGCGGATCGTCGTCGCGCGGCGGCGGCGGCGGCCAGGGCGGCGGA
CGCGCCGATTACGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.404

100

0.535
  ssb Vibrio cholerae strain A1552

49.711

100

0.506
  ssb Neisseria meningitidis MC58

36.464

100

0.388
  ssb Neisseria gonorrhoeae MS11

36.464

100

0.388