Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUA10_RS17725 Genome accession   NZ_CP089317
Coordinates   3726111..3726635 (+) Length   174 a.a.
NCBI ID   WP_004249162.1    Uniprot ID   A0A1Z1SRL1
Organism   Proteus mirabilis strain PM1162     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3721111..3731635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA10_RS17720 (LUA10_17720) uvrA 3723024..3725858 (-) 2835 WP_004249165.1 excinuclease ABC subunit UvrA -
  LUA10_RS17725 (LUA10_17725) ssb 3726111..3726635 (+) 525 WP_004249162.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LUA10_RS17730 (LUA10_17730) zur 3726977..3727507 (+) 531 WP_004245904.1 zinc uptake transcriptional repressor Zur -
  LUA10_RS17735 (LUA10_17735) lexA 3727696..3728307 (-) 612 WP_004245906.1 transcriptional repressor LexA -
  LUA10_RS17740 (LUA10_17740) - 3728398..3728832 (-) 435 Protein_3451 IS5 family transposase -
  LUA10_RS17745 (LUA10_17745) - 3728867..3729742 (-) 876 WP_001617865.1 extended-spectrum class A beta-lactamase CTX-M-14 -
  LUA10_RS17750 (LUA10_17750) - 3729992..3731254 (-) 1263 WP_000608644.1 IS1380-like element ISEcp1 family transposase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18830.90 Da        Isoelectric Point: 4.9468

>NTDB_id=636535 LUA10_RS17725 WP_004249162.1 3726111..3726635(+) (ssb) [Proteus mirabilis strain PM1162]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGQGGWGQPQQPQASQQFSGGAPSRPAQQPAAAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=636535 LUA10_RS17725 WP_004249162.1 3726111..3726635(+) (ssb) [Proteus mirabilis strain PM1162]
ATGGCGAGCAGAGGCGTTAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTGGCAAATCTGACACTAGCAACTTCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAGAAAACCG
AATGGCACCGTGTGGTCATTTTCGGCAAACTAGCAGAAATTGCTGGCGAGTATCTGCGCAAAGGTTCACAAGTTTATATT
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGCTACAGCACTGAAGTTGTGGTGAATATCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCACCTTCACAAGGCCAAGGCGGTTGGGGTCAACCTC
AGCAACCACAAGCATCACAACAGTTTAGTGGTGGCGCACCATCTCGCCCAGCACAACAACCCGCAGCGGCACCAGCGCCA
AGTAATGAACCACCAATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z1SRL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.892

100

0.764
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.603
  ssb Neisseria meningitidis MC58

48.023

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.489