Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUX29_RS12025 Genome accession   NZ_CP089311
Coordinates   2488944..2489474 (+) Length   176 a.a.
NCBI ID   WP_232411295.1    Uniprot ID   -
Organism   Aureimonas altamirensis strain C2P003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2483944..2494474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUX29_RS12015 (LUX29_12015) - 2484395..2485861 (+) 1467 WP_232411290.1 NAD(P)H-hydrate dehydratase -
  LUX29_RS12020 (LUX29_12020) uvrA 2485817..2488693 (-) 2877 WP_232411292.1 excinuclease ABC subunit UvrA -
  LUX29_RS12025 (LUX29_12025) ssb 2488944..2489474 (+) 531 WP_232411295.1 single-stranded DNA-binding protein Machinery gene
  LUX29_RS12030 (LUX29_12030) - 2489634..2490365 (-) 732 WP_232411296.1 SDR family NAD(P)-dependent oxidoreductase -
  LUX29_RS12035 (LUX29_12035) - 2490448..2490840 (+) 393 WP_232411298.1 winged helix-turn-helix transcriptional regulator -
  LUX29_RS12045 (LUX29_12045) - 2491124..2491750 (-) 627 WP_232411300.1 MarC family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18796.51 Da        Isoelectric Point: 5.4016

>NTDB_id=636444 LUX29_RS12025 WP_232411295.1 2488944..2489474(+) (ssb) [Aureimonas altamirensis strain C2P003]
MAGSVNKVILVGNLGADPEVRRLNSGDAVVNLRIATSETWRDRQSGERRERTEWHNVVIFNENLVKVAEQYLKKGAKVYL
EGQLQTRSWEDQQGQKRYTTEVVLQRFRGELQMLDGRGEGGASFEGGSGGSGGGASRGGYDDRGGNGGGGGGRGGYDERG
GGGGGRGGEMDDEIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=636444 LUX29_RS12025 WP_232411295.1 2488944..2489474(+) (ssb) [Aureimonas altamirensis strain C2P003]
ATGGCAGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGAGCCGACCCGGAGGTACGCCGCCTGAATTCCGGCGA
CGCCGTCGTTAACCTGCGTATCGCCACGTCCGAAACCTGGCGCGATCGCCAGTCCGGCGAGCGGCGTGAGCGCACCGAAT
GGCACAACGTTGTCATCTTCAATGAAAACCTCGTCAAGGTTGCCGAGCAGTACCTCAAGAAGGGCGCGAAGGTTTATCTG
GAGGGTCAGTTGCAGACCCGGTCCTGGGAAGACCAGCAGGGCCAGAAGCGCTACACGACCGAGGTAGTTCTGCAGCGTTT
TCGCGGCGAGCTGCAGATGCTCGACGGGCGCGGCGAGGGCGGTGCCTCCTTTGAAGGCGGCAGCGGCGGCAGTGGCGGCG
GCGCAAGCCGTGGCGGTTACGACGATCGCGGCGGAAATGGTGGCGGCGGCGGCGGCCGTGGCGGCTATGACGAGCGCGGC
GGCGGCGGCGGTGGCCGCGGCGGCGAGATGGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.09

100

0.506
  ssb Vibrio cholerae strain A1552

60.484

70.455

0.426
  ssb Neisseria meningitidis MC58

40.782

100

0.415
  ssb Neisseria gonorrhoeae MS11

40.223

100

0.409